Gene Card
Best human hits
CD33; EXOSC4; EXOSC5
Species
Unique Gene ID
Phmamm.g00002809
Gene Model ID
Phmamm.CG.MTP2014.S84.g02809
Location
S84:226895..228475
Transcript Models and Sequences
Genoscope Yasuo Villefranche
3 results
AHC0AAA79YE11
Plate: Plate_79_E11
AHC0AAA144YL22
Plate: Plate_144_L22
AHC0AAA180YK23
Plate: Plate_180_K23
n/a
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
3 results
| IPR Term | Analysis | Definition |
|---|---|---|
| PNPase/RNase_PH_dom_sf | Gene3D | PNPase/RNase PH domain superfamily |
| ExoRNase_PH_dom1 | Pfam | Exoribonuclease, phosphorolytic domain 1 |
| Ribosomal_S5_D2-typ_fold | SUPERFAMILY | Ribosomal protein S5 domain 2-type fold |
GOSlim
34 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nuclear-transcribed mRNA catabolic process | Orthology | biological process |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| nucleolus | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| plasma membrane | Blast | cellular component |
| integral component of plasma membrane | Blast | cellular component |
| RNA catabolic process | Orthology | biological process |
| membrane | Blast | cellular component |
| integral component of membrane | Blast | cellular component |
| extracellular exosome | Blast | cellular component |
| RNA metabolic process | Orthology | biological process |
| hydrolase activity | Orthology | molecular function |
| nuclear lumen | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| cytoplasmic part | Orthology | cellular component |
| intracellular part | Orthology | cellular component |
| RNA processing | Orthology | biological process |
| intracellular organelle part | Orthology | cellular component |
| intracellular non-membrane-bounded organelle | Orthology | cellular component |
| mRNA catabolic process | Orthology | biological process |
| immune system process | Orthology | biological process |
| defense response | Orthology | biological process |
| plasma membrane part | Blast | cellular component |
| cell surface | Blast | cellular component |
| binding | Blast | molecular function |
| whole membrane | Blast | cellular component |
| cytoplasmic vesicle | Blast | cellular component |
| endomembrane system | Blast | cellular component |
| bounding membrane of organelle | Blast | cellular component |
| cytoskeleton | Blast | cellular component |
GO (Orthology)
24 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| 3'-5'-exoribonuclease activity | Hs | molecular function |
| nuclear exosome (RNase complex) | Hs | cellular component |
| cytoplasmic exosome (RNase complex) | Hs | cellular component |
| exosome (RNase complex) | Hs | cellular component |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| nucleolus | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| rRNA processing | Hs | biological process |
| RNA catabolic process | Hs | biological process |
| rRNA catabolic process | Hs | biological process |
| rRNA 3'-end processing | Hs | biological process |
| nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Hs | biological process |
| U4 snRNA 3'-end processing | Hs | biological process |
| transcriptionally active chromatin | Hs | cellular component |
| regulation of mRNA stability | Hs | biological process |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | Hs | biological process |
| defense response to virus | Hs | biological process |
| nuclear mRNA surveillance | Hs | biological process |
| polyadenylation-dependent snoRNA 3'-end processing | Hs | biological process |
| RNA phosphodiester bond hydrolysis, exonucleolytic | Hs | biological process |
GO (Blast)
24 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| 3'-5'-exoribonuclease activity | Hs | molecular function | 149 | 1.76e-45 |
| nuclear exosome (RNase complex) | Hs | cellular component | 149 | 1.76e-45 |
| cytoplasmic exosome (RNase complex) | Hs | cellular component | 149 | 1.76e-45 |
| exosome (RNase complex) | Hs | cellular component | 149 | 1.76e-45 |
| RNA binding | Hs | molecular function | 149 | 1.76e-45 |
| receptor activity | Hs | molecular function | 35.8 | 0.008 |
| protein binding | Hs | molecular function | 149 | 1.76e-45 |
| nucleus | Hs | cellular component | 149 | 1.76e-45 |
| nucleoplasm | Hs | cellular component | 149 | 1.76e-45 |
| nucleolus | Hs | cellular component | 149 | 1.76e-45 |
| cytoplasm | Hs | cellular component | 149 | 1.76e-45 |
| cytosol | Hs | cellular component | 149 | 1.76e-45 |
| plasma membrane | Hs | cellular component | 35.8 | 0.008 |
| integral component of plasma membrane | Hs | cellular component | 35.8 | 0.008 |
| external side of plasma membrane | Hs | cellular component | 35.8 | 0.008 |
| membrane | Hs | cellular component | 35.8 | 0.008 |
| integral component of membrane | Hs | cellular component | 35.8 | 0.008 |
| AU-rich element binding | Hs | molecular function | 42.7 | 3.57e-05 |
| carbohydrate binding | Hs | molecular function | 35.8 | 0.008 |
| transcriptionally active chromatin | Hs | cellular component | 149 | 1.76e-45 |
| specific granule membrane | Hs | cellular component | 35.8 | 0.008 |
| intermediate filament cytoskeleton | Hs | cellular component | 42.7 | 3.57e-05 |
| extracellular exosome | Hs | cellular component | 35.8 | 0.008 |
| tertiary granule membrane | Hs | cellular component | 35.8 | 0.008 |
| GO Term | Analysis | Type | e-value |
|---|
