Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

NLRC5; NLRP12; NOD2

Species

P.mammillata

Unique Gene ID

Phmamm.g00012326

Gene Model ID

Phmamm.CG.MTP2014.S844.g12326

Location

S844:20303..26165

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S844.g12326.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Leu-rich_rpt Pfam Leucine-rich repeat
NACHT_NTPase Pfam NACHT nucleoside triphosphatase
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily

GOSlim

26 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
actin binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
Golgi apparatus Blast cellular component
centrosome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
basolateral plasma membrane Blast cellular component
enzyme binding Blast molecular function
protein kinase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component
endopeptidase activity Blast molecular function
enzyme activator activity Blast molecular function
positive regulation of hydrolase activity Blast biological process
positive regulation of apoptotic process Blast biological process
carbohydrate derivative binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 58.9 9.16e-09
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 58.9 9.16e-09
actin binding Hs molecular function 54.3 2.37e-07
protein binding Hs molecular function 58.9 9.16e-09
ATP binding Hs molecular function 58.9 9.16e-09
nucleus Hs cellular component 58.9 9.16e-09
cytoplasm Hs cellular component 58.9 9.16e-09
mitochondrion Hs cellular component 54.3 2.37e-07
Golgi apparatus Hs cellular component 54.3 2.37e-07
centrosome Hs cellular component 58.9 9.16e-09
cytosol Hs cellular component 58.9 9.16e-09
cytoskeleton Hs cellular component 54.3 2.37e-07
plasma membrane Hs cellular component 54.3 2.37e-07
COP9 signalosome Hs cellular component 54.3 2.37e-07
cysteine-type endopeptidase activator activity involved in apoptotic process Hs molecular function 52.8 6.04e-07
cell surface Hs cellular component 54.3 2.37e-07
membrane Hs cellular component 54.3 2.37e-07
basolateral plasma membrane Hs cellular component 54.3 2.37e-07
enzyme binding Hs molecular function 54.3 2.37e-07
protein kinase binding Hs molecular function 54.3 2.37e-07
Hsp70 protein binding Hs molecular function 54.3 2.37e-07
vesicle Hs cellular component 54.3 2.37e-07
muramyl dipeptide binding Hs molecular function 54.3 2.37e-07
macromolecular complex Hs cellular component 54.3 2.37e-07
peptidoglycan binding Hs molecular function 54.3 2.37e-07
CARD domain binding Hs molecular function 54.3 2.37e-07
Hsp90 protein binding Hs molecular function 54.3 2.37e-07

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 0.0011