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GENE CARD

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Gene Card

Best human hits

ATG5; BMS1; TSR1

Species

P.mammillata

Unique Gene ID

Phmamm.g00012391

Gene Model ID

Phmamm.CG.MTP2014.S855.g12391

Location

S855:15532..23665

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

12 results

AHC0AAA24YI13

Plate: Plate_24_I13

AHC0AAA26YH04

Plate: Plate_26_H04

AHC0AAA62YC01

Plate: Plate_62_C01

AHC0AAA146YL07

Plate: Plate_146_L07

AHC0AAA147YA18

Plate: Plate_147_A18

AHC0AAA147YC20

Plate: Plate_147_C20

AHC0AAA181YK09

Plate: Plate_181_K09

AHC0AAA183YG03

Plate: Plate_183_G03

AHC0AAA212YN23

Plate: Plate_212_N23

AHC0AAA248YH20

Plate: Plate_248_H20

AHC0AAA258YH15

Plate: Plate_258_H15

AHC0AAA262YP20

Plate: Plate_262_P20

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
BMS1_TSR1_C SMART Ribosome biogenesis protein BMS1/TSR1, C-terminal
G_Bms1/Tsr1_dom ProSiteProfiles Bms1/Tsr1-type G domain
AARP2CN SMART AARP2CN
BMS1_TSR1_C Pfam Ribosome biogenesis protein BMS1/TSR1, C-terminal
AARP2CN Pfam AARP2CN
Atg5 Pfam Autophagy-related protein 5

GOSlim

25 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA binding Orthology molecular function
GTPase activity Orthology molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
GTP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
membrane Blast cellular component
RNA processing Orthology biological process
macromolecular complex Orthology cellular component
vacuole Blast cellular component
cell projection part Blast cellular component
microtubule Blast cellular component
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component
transferase activity Blast molecular function
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
cytoplasmic vesicle Blast cellular component
bounding membrane of organelle Blast cellular component
organelle part Blast cellular component

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
RNA binding Hs molecular function
GTPase activity Hs molecular function
GTP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytosol Hs cellular component
rRNA processing Hs biological process
preribosome, small subunit precursor Hs cellular component
U3 snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 90.9 1.83e-18
RNA binding Hs molecular function 607 0.0
GTPase activity Hs molecular function 607 0.0
protein binding Hs molecular function 155 2.52e-42
ATP binding Hs molecular function 90.9 1.83e-18
GTP binding Hs molecular function 607 0.0
nucleus Hs cellular component 607 0.0
nucleoplasm Hs cellular component 607 0.0
nucleolus Hs cellular component 607 0.0
cytoplasm Hs cellular component 155 2.52e-42
autophagosome Hs cellular component 155 2.52e-42
cytosol Hs cellular component 607 0.0
axoneme Hs cellular component 155 2.52e-42
membrane Hs cellular component 155 2.52e-42
Atg8 ligase activity Hs molecular function 155 2.52e-42
phagocytic vesicle membrane Hs cellular component 155 2.52e-42
90S preribosome Hs cellular component 90.9 1.83e-18
preribosome, small subunit precursor Hs cellular component 607 0.0
pre-autophagosomal structure membrane Hs cellular component 155 2.52e-42
Atg12-Atg5-Atg16 complex Hs cellular component 155 2.52e-42
U3 snoRNA binding Hs molecular function 607 0.0
ER-mitochondrion membrane contact site Hs cellular component 155 2.52e-42

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleus SMART cellular component 6.8E-23
cytoplasm Pfam cellular component 3.4E-22
autophagy Pfam biological process 3.4E-22
ribosome biogenesis PANTHER biological process 3.8E-248