Login
Help

GENE CARD

Submit your Data

  1. Gene 'Boleac.CG.SB_v3.S35....' > 

Gene Card

Best human hits

TBX2; TBX4; TBX6

Species

P.mammillata

Unique Gene ID

Phmamm.g00012396

Gene Model ID

Phmamm.CG.MTP2014.S855.g12396

Location

S855:69176..71023

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S855.g12396.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

2 results

AHC0AAA128YK01

Plate: Plate_128_K01

AHC0AAA257YJ15

Plate: Plate_257_J15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
TF_T-box ProSiteProfiles Transcription factor, T-box
TF_T-box PRINTS Transcription factor, T-box
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding
TF_T-box CDD Transcription factor, T-box
TF_T-box PANTHER Transcription factor, T-box
T-box_sf Gene3D T-box superfamily
TF_T-box Pfam Transcription factor, T-box
TF_T-box SMART Transcription factor, T-box

GOSlim

12 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
transcription factor binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 202 9.25e-58
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 202 4.74e-60
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 202 4.74e-60
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 202 9.25e-58
RNA polymerase II transcription factor binding Hs molecular function 202 4.74e-60
RNA polymerase II activating transcription factor binding Hs molecular function 202 4.74e-60
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function 202 4.74e-60
DNA binding Hs molecular function 202 4.74e-60
transcription factor activity, sequence-specific DNA binding Hs molecular function 202 4.74e-60
protein binding Hs molecular function 202 4.74e-60
nucleus Hs cellular component 202 4.74e-60
transcription factor complex Hs cellular component 202 9.25e-58
sequence-specific DNA binding Hs molecular function 202 9.25e-58

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 2.6E-101
nucleus PANTHER cellular component 2.6E-101
regulation of transcription, DNA-templated PANTHER biological process 2.6E-101

Back to Top