Aniseed - Gene card

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Genoscope Yasuo Villefranche

64 results

AHC0AAA263YD01

Plate: Plate_263_D01

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
RRM_dom	SMART	RNA recognition motif domain
U1snRNP70_N	Pfam	U1 small nuclear ribonucleoprotein of 70kDa N-terminal
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
snRNP70_RRM	CDD	snRNP70, RNA recognition motif
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

19 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nucleoside-triphosphatase activity	Orthology	molecular function
regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
response to lipid	Orthology	biological process
cellular response to organic substance	Orthology	biological process
macromolecular complex binding	Orthology	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
commitment complex	Hs	cellular component
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U1 snRNP	Hs	cellular component
cytoplasm	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
U1 snRNA binding	Hs	molecular function
regulation of ATPase activity	Hs	biological process
regulation of RNA splicing	Hs	biological process
positive regulation of mRNA splicing, via spliceosome	Hs	biological process
U2-type prespliceosome	Hs	cellular component
precatalytic spliceosome	Hs	cellular component
cellular response to retinoic acid	Hs	biological process
cellular response to tumor necrosis factor	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
U1 snRNP binding	Hs	molecular function

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
commitment complex	Hs	cellular component	249	4.39e-78
nucleic acid binding	Hs	molecular function	249	4.39e-78
RNA binding	Hs	molecular function	249	4.39e-78
mRNA binding	Hs	molecular function	249	4.39e-78
protein binding	Hs	molecular function	249	4.39e-78
nucleus	Hs	cellular component	249	4.39e-78
nucleoplasm	Hs	cellular component	249	4.39e-78
spliceosomal complex	Hs	cellular component	249	4.39e-78
U1 snRNP	Hs	cellular component	249	4.39e-78
U12-type spliceosomal complex	Hs	cellular component	93.6	1.05e-21
nucleolus	Hs	cellular component	93.6	1.05e-21
cytoplasm	Hs	cellular component	249	4.39e-78
nuclear speck	Hs	cellular component	249	4.39e-78
snRNA binding	Hs	molecular function	93.6	1.05e-21
intracellular ribonucleoprotein complex	Hs	cellular component	249	4.39e-78
U1 snRNA binding	Hs	molecular function	249	4.39e-78
U2-type prespliceosome	Hs	cellular component	249	4.39e-78
precatalytic spliceosome	Hs	cellular component	249	4.39e-78
U1 snRNP binding	Hs	molecular function	249	4.39e-78

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
mRNA splicing, via spliceosome	PANTHER	biological process	1.7E-101
nucleic acid binding	SUPERFAMILY	molecular function	6.85E-30
U1 snRNA binding	CDD	molecular function	1.19326E-53

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