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GENE CARD

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Gene Card

Best human hits

CTCF; CTCFL; ZNF501

Species

P.mammillata

Unique Gene ID

Phmamm.g00002920

Gene Model ID

Phmamm.CG.MTP2014.S89.g02920

Location

S89:126737..133995

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

20 results

AHC0AAA23YD08

Plate: Plate_23_D08

AHC0AAA5YC18

Plate: Plate_5_C18

AHC0AAA6YH08

Plate: Plate_6_H08

AHC0AAA32YF05

Plate: Plate_32_F05

AHC0AAA46YL15

Plate: Plate_46_L15

AHC0AAA50YG08

Plate: Plate_50_G08

AHC0AAA52YI20

Plate: Plate_52_I20

AHC0AAA117YI08

Plate: Plate_117_I08

AHC0AAA124YN02

Plate: Plate_124_N02

AHC0AAA126YG17

Plate: Plate_126_G17

AHC0AAA126YM21

Plate: Plate_126_M21

AHC0AAA136YN12

Plate: Plate_136_N12

AHC0AAA137YK17

Plate: Plate_137_K17

AHC0AAA142YB19

Plate: Plate_142_B19

AHC0AAA149YJ01

Plate: Plate_149_J01

AHC0AAA96YB13

Plate: Plate_96_B13

AHC0AAA160YP09

Plate: Plate_160_P09

AHC0AAA214YP09

Plate: Plate_214_P09

AHC0AAA218YB19

Plate: Plate_218_B19

AHC0AAA250YI10

Plate: Plate_250_I10

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type
Znf_C2H2_type Pfam Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type

GOSlim

19 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription corepressor activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
zinc ion binding Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Blast molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
chromosome, centromeric region Hs cellular component 327 9.27e-102
condensed chromosome Hs cellular component 327 9.27e-102
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 327 9.27e-102
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 327 9.27e-102
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 314 3.20e-97
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 327 9.27e-102
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 327 9.27e-102
nucleic acid binding Hs molecular function 327 9.27e-102
DNA binding Hs molecular function 327 9.27e-102
chromatin binding Hs molecular function 327 9.27e-102
transcription factor activity, sequence-specific DNA binding Hs molecular function 327 9.27e-102
transcription corepressor activity Hs molecular function 327 9.27e-102
protein binding Hs molecular function 327 9.27e-102
nucleus Hs cellular component 327 9.27e-102
nucleoplasm Hs cellular component 327 9.27e-102
chromosome Hs cellular component 327 9.27e-102
nucleolus Hs cellular component 327 9.27e-102
cytoplasm Hs cellular component 314 3.20e-97
zinc ion binding Hs molecular function 327 9.27e-102
histone binding Hs molecular function 314 3.20e-97
chromatin insulator sequence binding Hs molecular function 327 9.27e-102
sequence-specific DNA binding Hs molecular function 327 9.27e-102
transcription regulatory region DNA binding Hs molecular function 327 9.27e-102
metal ion binding Hs molecular function 327 9.27e-102

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.8E-5