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GENE CARD

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Gene Card

Best human hits

EXOSC7; EXOSC9; GPN1

Species

P.mammillata

Unique Gene ID

Phmamm.g00013044

Gene Model ID

Phmamm.CG.MTP2014.S971.g13044

Location

S971:23487..31136

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S971.g13044.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

12 results

AHC0AAA100YP18

Plate: Plate_100_P18

AHC0AAA106YD13

Plate: Plate_106_D13

AHC0AAA83YO06

Plate: Plate_83_O06

AHC0AAA106YF15

Plate: Plate_106_F15

AHC0AAA188YM02

Plate: Plate_188_M02

AHC0AAA194YD17

Plate: Plate_194_D17

AHC0AAA208YJ19

Plate: Plate_208_J19

AHC0AAA229YI07

Plate: Plate_229_I07

AHC0AAA244YP17

Plate: Plate_244_P17

AHC0AAA254YN18

Plate: Plate_254_N18

AHC0AAA256YE16

Plate: Plate_256_E16

AHC0AAA268YG16

Plate: Plate_268_G16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
ExoRNase_PH_dom2 Pfam Exoribonuclease, phosphorolytic domain 2
ExoRNase_PH_dom1 Pfam Exoribonuclease, phosphorolytic domain 1
Gpn Pfam GPN-loop GTPase
PNPase/RNase_PH_dom_sf Gene3D PNPase/RNase PH domain superfamily
Ribosomal_S5_D2-typ_fold SUPERFAMILY Ribosomal protein S5 domain 2-type fold
ExoRNase_PH_dom2_sf SUPERFAMILY Exoribonuclease, PH domain 2 superfamily
Rrp45 CDD Exosome complex component RRP45
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase

GOSlim

28 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
nuclear-transcribed mRNA catabolic process Orthology biological process
RNA binding Orthology molecular function
GTPase activity Blast molecular function
protein binding Orthology molecular function
GTP binding Blast molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
cytosol Orthology cellular component
RNA processing Orthology biological process
RNA catabolic process Orthology biological process
immune response Orthology biological process
hydrolase activity Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular exosome Orthology cellular component
RNA metabolic process Orthology biological process
nuclear lumen Orthology cellular component
macromolecular complex Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
transcription factor binding Orthology molecular function
cellular component organization Orthology biological process
mRNA catabolic process Orthology biological process
mRNA processing Orthology biological process

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
3'-5'-exoribonuclease activity Hs molecular function
nuclear exosome (RNase complex) Hs cellular component
cytoplasmic exosome (RNase complex) Hs cellular component
exosome (RNase complex) Hs cellular component
nuclear chromosome Hs cellular component
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
nuclear-transcribed mRNA catabolic process Hs biological process
RNA polymerase II activating transcription factor binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
rRNA processing Hs biological process
RNA processing Hs biological process
immune response Hs biological process
AU-rich element binding Hs molecular function
positive regulation of cell growth Hs biological process
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' Hs biological process
U1 snRNA 3'-end processing Hs biological process
U4 snRNA 3'-end processing Hs biological process
U5 snRNA 3'-end processing Hs biological process
regulation of mRNA stability Hs biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
extracellular exosome Hs cellular component
nuclear mRNA surveillance Hs biological process
nuclear polyadenylation-dependent rRNA catabolic process Hs biological process
nuclear polyadenylation-dependent tRNA catabolic process Hs biological process
nuclear polyadenylation-dependent mRNA catabolic process Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 104 2.21e-24
3'-5'-exoribonuclease activity Hs molecular function 150 3.60e-40
nuclear exosome (RNase complex) Hs cellular component 150 3.60e-40
cytoplasmic exosome (RNase complex) Hs cellular component 150 3.60e-40
exosome (RNase complex) Hs cellular component 150 3.60e-40
nuclear chromosome Hs cellular component 150 3.60e-40
RNA polymerase II activating transcription factor binding Hs molecular function 150 3.60e-40
RNA binding Hs molecular function 150 3.60e-40
GTPase activity Hs molecular function 104 2.21e-24
protein binding Hs molecular function 150 3.60e-40
GTP binding Hs molecular function 104 2.21e-24
nucleus Hs cellular component 150 3.60e-40
nucleoplasm Hs cellular component 150 3.60e-40
nucleolus Hs cellular component 150 3.60e-40
cytoplasm Hs cellular component 150 3.60e-40
mitochondrion Hs cellular component 104 2.21e-24
cytosol Hs cellular component 150 3.60e-40
hydrolase activity Hs molecular function 104 2.21e-24
AU-rich element binding Hs molecular function 150 3.60e-40
extracellular exosome Hs cellular component 150 3.60e-40

GO (InterProScan)

2 results

GO Term Analysis Type e-value
exosome (RNase complex) CDD cellular component 1.04779E-112
RNA processing CDD biological process 1.04779E-112

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