Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S10055.g08511.02.t

Possible name(s)

RPS3

Gene model

Phfumi.CG.MTP2014.S10055.g08511

Location

S10055 [3,272 / 5,602]

Sequences

Amino acid sequence

Length: 237

>Phfumi.CG.MTP2014.S10055.g08511.02.p
MATPISKKKKFVLDGLFKAELNELLWRELAEDGYSGVEVRVTPSRTEIIILATRTQNVLG
EKGRRIRELTSMVQKRFNFKDDTVELYAEKVANRGLCATAQCESLRYKLLGGLAVRRACY
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVREYVDTAVRHVLLRQG
VLGIKVKIMLPWDPTGKIGPKKPLPDNVNIVEPKEEEPVTGPKSESKVAKVPEAMPG

Nucleotide sequence

Length: 711

>Phfumi.CG.MTP2014.S10055.g08511.02.t
ATGGCGACGCCGATATCCAAGAAAAAGAAGTTTGTCCTCGACGGGCTTTTTAAAGCCGAG
TTAAACGAACTTTTGTGGAGGGAACTGGCCGAAGACGGCTACAGTGGTGTAGAGGTCCGT
GTCACCCCTTCCAGAACCGAGATCATTATTCTCGCCACACGAACACAAAATGTCCTCGGC
GAAAAAGGCCGTCGCATTCGGGAGTTGACTTCCATGGTCCAAAAACGGTTTAACTTCAAA
GACGACACAGTTGAGTTGTATGCTGAGAAGGTTGCCAACCGTGGTCTATGTGCAACAGCT
CAATGTGAATCCTTAAGATACAAACTACTTGGAGGTCTTGCTGTCAGAAGGGCATGCTAT
GGTGTACTTCGCTTCATCATGGAGTCTGGTGCTAAGGGTTGTGAAGTTGTGGTGTCTGGC
AAACTCCGTGGTCAGCGTGCCAAGTCCATGAAGTTTGTAGATGGTCTTATGATCCATTCT
GGTGACCCAGTCAGAGAATATGTTGACACCGCTGTGCGCCATGTTCTGCTTAGACAAGGT
GTGTTGGGCATCAAGGTTAAGATTATGTTACCATGGGATCCCACTGGCAAAATAGGGCCC
AAGAAGCCCCTGCCAGACAATGTGAACATTGTGGAACCGAAAGAAGAGGAACCTGTTACC
GGACCCAAGAGCGAGTCAAAGGTGGCCAAGGTCCCCGAAGCGATGCCCGGT

InterProScan

Gene3D	KH_dom-like_a/b (IPR015946) - T[1-91] 1.7E-44
TIGRFAM	Ribosomal_S3_euk/arc (IPR005703) - T[8-212] 1.6E-70
SUPERFAMILY	KH_sf_prok-type (IPR009019) - T[10-99] 1.67E-24
Pfam	KH_dom_type_2 (IPR004044) - T[21-93] 8.0E-11
ProSiteProfiles	KH_dom_type_2 (IPR004044) - T[21-92] 11.599
Gene3D	Ribosomal_S3_C_sf (IPR036419) - T[93-235] 9.8E-72
SUPERFAMILY	Ribosomal_S3_C_sf (IPR036419) - T[93-192] 6.54E-28
Pfam	Ribosomal_S3_C (IPR001351) - T[106-188] 1.5E-23
ProSitePatterns	Ribosomal_S3_CS (IPR018280) - T[147-183] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RS3_HUMAN	85.654 %	400	2.76E-143