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TRANSCRIPT CARD

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  1. Clone 'cicl077e23' > 
  2. Clone 'ma144m21' > 
  3. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S10562.g08624.01.t

Possible name(s)

SNRNP40; WDR5; WDR5B

Gene model

Phfumi.CG.MTP2014.S10562.g08624

Location

S10562 [3,949 / 4,978]

Sequences

Amino acid sequence

Length: 343

>Phfumi.CG.MTP2014.S10562.g08624.01.p
MAVQPHSSNYGAVVAAGAQNNFAVTAYDESAQRPRTSNLLAPIMLLSGHEGEIYSSKFHP
EGNILASAGHERMIYFWMVFGECENFHLIKGGHNGSILDLQFNTDGSNIFTASTDKTVGM
FDTETGERIKRMKGHNAIVNACSSTKRGDQLVASASDDCTVKIWDTRYRGAIKTLQLTYQ
VTAVSFDDTGGNVILGGIDNDVKVYDIRTGKMTFQLCGHADTITGISVNSDGSYALSNSM
DCTMRVWDIRPYAPQERCIKVFTGHQHNFEKNLLKCSWSPDDLKVTGGSADRNVVVWDVP
NQHVLYKLPGHNGSVNDVQFHPNQPILLSCSSDKQIYLGELNK

Nucleotide sequence

Length: 1,029

>Phfumi.CG.MTP2014.S10562.g08624.01.t
ATGGCAGTACAGCCCCATTCCTCTAACTATGGAGCTGTTGTGGCAGCTGGAGCACAAAAC
AATTTTGCTGTCACAGCCTACGATGAATCAGCCCAAAGACCCAGGACTTCCAACCTTCTA
GCCCCAATAATGCTTTTGTCAGGTCATGAAGGTGAAATTTACAGCTCAAAATTTCACCCA
GAGGGCAACATCCTTGCATCTGCTGGACATGAAAGAATGATTTATTTTTGGATGGTTTTT
GGAGAATGTGAGAATTTTCATCTCATAAAAGGTGGCCACAATGGATCTATTCTGGATCTG
CAATTTAACACTGATGGAAGCAACATTTTTACTGCAAGCACTGACAAAACTGTTGGAATG
TTTGATACTGAGACTGGAGAGAGAATAAAGCGCATGAAAGGGCACAATGCAATTGTCAAC
GCTTGTAGTTCCACTAAGCGTGGGGACCAGCTAGTTGCATCAGCAAGTGATGACTGTACA
GTAAAAATATGGGATACCCGTTATCGCGGAGCAATCAAAACACTGCAGTTAACATACCAA
GTAACTGCAGTATCGTTTGATGATACCGGTGGTAATGTTATCTTGGGTGGCATTGATAAT
GATGTCAAAGTGTATGATATTCGCACAGGCAAGATGACTTTTCAATTATGTGGCCATGCT
GACACAATCACAGGAATTTCTGTTAATAGTGATGGCTCCTATGCCTTGTCAAACTCAATG
GATTGCACGATGAGAGTGTGGGATATTAGACCATATGCACCACAGGAAAGATGCATCAAA
GTATTCACTGGCCACCAACACAATTTTGAAAAGAACTTGCTGAAATGCAGCTGGTCACCT
GATGACCTAAAAGTCACCGGAGGCTCAGCAGACAGAAATGTTGTTGTGTGGGATGTTCCA
AACCAACATGTGTTGTACAAGCTACCAGGACACAATGGATCTGTCAATGACGTCCAGTTT
CATCCCAATCAGCCAATTCTTCTGTCCTGCTCCAGCGATAAACAGATATATTTGGGAGAG
CTGAACAAA

InterProScan

SMART
WD40_repeat (IPR001680) - T[39-78] 9.0E-5 - T[82-122] 2.6E-4 - T[125-165] 7.6E-8 - T[168-206] 2.1 - T[209-248] 7.0E-6 - T[255-298] 2.3E-4 - T[301-340] 5.4E-6
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[42-342] 4.3E-99
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[42-338] 3.4E-75
Pfam
WD40_repeat (IPR001680) - T[43-77] 0.0078 - T[91-122] 0.032 - T[129-165] 1.9E-5 - T[214-248] 1.1E-4 - T[257-298] 1.1E-4 - T[305-338] 2.6E-5
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[46-343] 47.51
ProSiteProfiles
WD40_repeat (IPR001680) - T[46-77] 12.146 - T[90-131] 11.578 - T[132-174] 11.077 - T[181-215] 8.804 - T[216-250] 13.215 - T[277-307] 9.138 - T[308-343] 11.544
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[152-166] 7.6E-6 - T[235-249] 7.6E-6 - T[285-299] 7.6E-6
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[152-166] . - T[285-299] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
WDR5_HUMAN 28.875 % 130 3.55E-35
WDR5B_HUMAN 29.573 % 138 3.22E-38
SNR40_HUMAN 56.932 % 429 2.8E-151