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TRANSCRIPT CARD

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  1. Clone 'ciem816f05'
  2. Clone 'ciem817c07'
  3. Clone 'ciem845h24'
  4. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S1088.g03233.01.t

Possible name(s)

HMCN1; SPON1; SPON2

Location

S1088 [7,187 / 12,419]

Sequences

Amino acid sequence

Length: 953

>Phfumi.CG.MTP2014.S1088.g03233.01.p
MQPFGTTTLVLLVAVAGSYGVRFLPDKHYRLDCNGNPPPRYFSAPRSGDNGFHLRIEGAP
ESYEPEREYVVTLQSTLPSSFRGFAIRSVTTEDLSRPAGFFTPVNPFTTRALTSCNHVTT
HVSNGKKTRVSTRWRAPSSGFGCVTISATVIQKGSIWFKNTGRLSLEICEAVESTSPTVD
GTHCCACGSATYRMTFYGLWSPQSHPKDYPEYSTHWSNVVGASHSLRYSIWDYGELSSPA
VQKVAEWGWPNDVEAEVRSQGDDVMSVIKTKAQWPAYEPRNIRSPPSDTFTVDRQHPLVS
LLTMLGPSPDWNVGITKESMCTAQCGWAGERTYNLTPWDAGTDNGVSYMSPNSPTVPHEK
VRALTTLDHPKSPFYNPEGGSIPPVARVVINRISLEGETCGQNEEAPIDNDFDVRVASSS
QSNDATPCMYSPWGDWSNCGVTCGWGIKTRSRMVKAQTGAAACEVTMAKEICKGSGTCEN
SNEATVCIYSDWTTWSSCGATCGNATRFRSRVLQWPSEERFCHEPLKEMSSCALAQCPSQ
DSCQYSPWSRWMPCSVTCGFGQTLRKRFIISDLSDVSLCTKPLIQNSECLRSMTCEPSSE
PDSPDCTYSPWTDWSACPVTCGVGQAFRKRMLVSSGSTATSCRDFEMENSKCMTSASCID
AEEQSSAPTCTYGDWSEWMPCSVSCGTGTTLRKRFLTGSNTMGICDGLIMEQVLCYKTPC
DVPTTSECVYARWTPWMPCSVTCGKGKTLRKRFLSGDADSGNCEAFQMETNLCMTACDVS
DTSLPCEYADWSPWMPCNAPCGQLGETLRKRMLTSASTECEAVVMETKSCMSPACPEAHC
ELQPWQPWGKCSTTCGNRGTKIRRRFLANVTSQMDCNDAELVERSRCRNPRCGRACVLSE
WGPWTICSATCKAGKHYGYQMRRRRVLTRPRGRGRRCGQRREKKRCLCPIIAT

Nucleotide sequence

Length: 2,862

>Phfumi.CG.MTP2014.S1088.g03233.01.t
ATGCAGCCGTTTGGAACCACCACGCTTGTTCTGCTGGTAGCTGTCGCCGGATCATATGGT
GTTCGCTTTTTACCCGACAAACATTATCGCCTCGACTGCAATGGAAATCCCCCGCCGCGA
TATTTTTCAGCCCCTCGCAGCGGTGACAACGGGTTCCACTTACGAATAGAAGGCGCCCCT
GAGTCATATGAGCCTGAGAGGGAATATGTTGTTACCTTACAAAGCACGCTGCCCAGCAGT
TTTCGGGGTTTCGCCATTAGATCCGTGACAACTGAAGACTTGTCTCGACCAGCAGGATTT
TTTACGCCTGTCAACCCATTCACAACCCGCGCACTGACATCGTGCAATCATGTGACCACT
CACGTCAGCAATGGCAAGAAGACTCGAGTTTCAACCAGGTGGCGGGCCCCATCTAGTGGA
TTTGGCTGCGTGACAATTTCAGCCACCGTGATTCAAAAAGGGTCAATTTGGTTTAAAAAC
ACCGGTCGTTTATCGTTGGAAATATGCGAGGCAGTTGAGTCAACGTCACCAACCGTCGAT
GGCACACATTGCTGTGCATGTGGCAGCGCCACCTATCGTATGACGTTTTACGGTCTATGG
TCGCCACAATCACACCCCAAGGACTATCCCGAATATTCAACTCATTGGTCCAACGTGGTT
GGGGCTTCGCACAGCTTACGTTACTCAATATGGGATTACGGGGAGCTGTCGAGCCCCGCC
GTACAAAAAGTGGCGGAATGGGGTTGGCCGAATGACGTCGAAGCAGAAGTGAGGTCACAG
GGTGATGACGTAATGTCGGTTATTAAAACCAAAGCCCAGTGGCCAGCATACGAACCAAGA
AATATACGCTCTCCTCCATCTGACACATTTACTGTTGATCGTCAACATCCACTTGTGTCG
CTTCTCACCATGCTGGGTCCGAGCCCCGACTGGAATGTTGGCATCACCAAAGAATCAATG
TGCACTGCTCAGTGCGGATGGGCAGGGGAAAGAACGTACAATCTAACGCCATGGGACGCC
GGAACCGACAATGGTGTCAGCTACATGTCACCAAACTCCCCTACTGTCCCACACGAAAAA
GTACGCGCCCTAACTACACTCGACCATCCCAAGTCGCCATTTTACAATCCAGAAGGTGGC
TCCATTCCACCTGTGGCACGAGTGGTGATCAATAGAATTTCCTTGGAGGGCGAAACTTGT
GGCCAAAACGAAGAAGCCCCGATTGACAATGACTTTGACGTCAGAGTTGCGTCATCTTCC
CAATCGAACGATGCCACGCCGTGTATGTACAGCCCCTGGGGTGATTGGTCTAACTGCGGC
GTCACATGTGGATGGGGAATTAAAACTCGAAGCAGAATGGTGAAGGCCCAAACAGGTGCT
GCTGCCTGTGAGGTTACAATGGCGAAGGAAATTTGTAAAGGCAGTGGTACATGTGAAAAC
AGCAATGAAGCAACTGTATGCATTTATTCAGACTGGACCACTTGGTCGAGCTGTGGCGCC
ACGTGCGGCAATGCTACTCGATTCAGGTCACGTGTCTTACAGTGGCCATCCGAAGAGCGA
TTTTGTCACGAGCCGCTAAAAGAAATGTCGTCTTGTGCACTTGCACAATGTCCATCTCAA
GACAGTTGCCAGTATTCACCGTGGAGTAGATGGATGCCATGCTCCGTCACCTGTGGTTTC
GGTCAAACACTTCGCAAAAGGTTTATTATTTCCGATTTAAGTGATGTAAGCCTCTGCACC
AAACCACTCATCCAAAACAGCGAATGTCTGCGGTCGATGACGTGTGAACCGAGCTCAGAA
CCCGATTCGCCTGATTGCACATATTCACCATGGACTGATTGGTCCGCTTGCCCGGTCACG
TGCGGCGTCGGTCAAGCGTTTCGAAAGCGAATGCTCGTCAGCTCAGGTTCAACAGCAACT
TCTTGCCGAGACTTCGAAATGGAGAACTCAAAGTGCATGACGTCGGCGTCATGCATTGAT
GCAGAAGAGCAGTCAAGCGCACCGACATGCACGTACGGTGACTGGTCGGAGTGGATGCCT
TGCTCTGTGTCGTGCGGCACTGGCACCACCTTGCGGAAGCGGTTTTTAACTGGTTCAAAC
ACCATGGGAATCTGCGATGGCCTTATAATGGAGCAGGTCTTGTGTTACAAGACGCCATGT
GATGTGCCCACTACAAGCGAATGTGTCTACGCCCGCTGGACACCGTGGATGCCATGTTCT
GTCACCTGCGGCAAAGGTAAAACTTTAAGAAAGCGATTCCTGAGCGGCGACGCCGACTCC
GGGAATTGCGAAGCATTTCAGATGGAGACGAACCTTTGCATGACGGCCTGTGACGTGAGC
GACACGTCATTACCTTGTGAGTACGCTGATTGGTCGCCTTGGATGCCTTGCAACGCACCC
TGCGGCCAACTCGGAGAAACACTTCGAAAAAGGATGCTGACGTCAGCTTCGACCGAATGC
GAGGCAGTTGTCATGGAAACAAAATCTTGCATGTCTCCGGCGTGTCCTGAAGCGCATTGT
GAGCTACAACCGTGGCAGCCGTGGGGCAAGTGCTCGACCACTTGCGGCAACCGAGGCACC
AAAATCCGGCGACGATTTCTCGCCAATGTGACATCACAGATGGATTGTAATGACGCAGAG
TTGGTGGAAAGATCAAGATGCCGCAATCCACGTTGTGGTCGGGCGTGTGTTCTAAGCGAA
TGGGGCCCTTGGACGATTTGCAGCGCCACATGCAAAGCAGGCAAACATTACGGTTATCAG
ATGAGACGTCGACGAGTGTTGACCCGACCCCGCGGCAGAGGCCGAAGATGTGGTCAAAGG
AGGGAGAAGAAAAGATGTTTGTGCCCCATTATTGCCACATGA

InterProScan

ProSiteProfiles
Reeler_dom (IPR002861) - T[18-181] 26.504
CDD
Reeler_dom (IPR002861) - T[33-169] 1.12186E-25
Pfam
Reeler_dom (IPR002861) - T[52-158] 2.3E-15
Gene3D
Spondin_N_sf (IPR038678) - T[173-366] 2.7E-65
ProSiteProfiles
Spondin_N (IPR009465) - T[180-373] 72.396
Pfam
Spondin_N (IPR009465) - T[190-384] 7.5E-67
Gene3D
TSP1_rpt_sf (IPR036383) - T[425-478] 3.2E-9 - T[484-538] 8.2E-11 - T[540-595] 3.0E-9 - T[603-658] 1.9E-8 - T[668-720] 4.8E-10 - T[725-777] 4.2E-9 - T[782-836] 1.1E-7 - T[837-892] 3.1E-9 - T[893-947] 3.0E-9
ProSiteProfiles
TSP1_rpt (IPR000884) - T[427-479] 9.4 - T[486-538] 10.73 - T[542-596] 9.512 - T[605-659] 9.868 - T[669-721] 10.337 - T[727-836] 9.937 - T[839-893] 9.179 - T[895-949] 10.11
SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[427-472] 8.37E-9 - T[487-537] 2.35E-8 - T[543-589] 7.72E-8 - T[604-653] 8.11E-8 - T[669-720] 2.62E-8 - T[725-775] 1.44E-7 - T[784-835] 2.49E-6 - T[839-892] 8.37E-7 - T[896-946] 8.89E-6
SMART
TSP1_rpt (IPR000884) - T[430-479] 2.4E-6 - T[489-538] 3.9E-4 - T[545-596] 0.015 - T[608-659] 1.1E-5 - T[672-721] 6.3E-7 - T[730-778] 4.5E-7 - T[788-836] 2.6E-4 - T[842-893] 0.0057 - T[898-949] 0.064
Pfam
TSP1_rpt (IPR000884) - T[431-473] 1.3E-8 - T[490-537] 1.0E-6 - T[546-595] 8.5E-10 - T[609-658] 1.0E-8 - T[673-720] 2.0E-7 - T[732-775] 7.9E-11 - T[790-835] 5.1E-8 - T[844-892] 3.4E-5 - T[899-946] 0.0046

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HMCN1_HUMAN 28.532 % 98.6 1.1E-20
SPON1_HUMAN 39.39 % 513 2.85E-169
SPON2_HUMAN 33.922 % 140 2.42E-36