- Clone 'cilv044b08' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S11.g00239.02.t
Possible name(s)
LRP1; LRP6
Gene model
Location
S11 [162,069 / 170,131]
Amino acid sequence
Length: 882
>Phfumi.CG.MTP2014.S11.g00239.02.p
MGHGIESIAYDWRNENLYLTDSSLKWVLVADNQFQYYASIYKSDPDPAYGLALHAMRRFL
FFSTYKSRGSKIIRTDLAGKNATTLFAYPDVHDVTGMTVDYADEKLYWTDFTGYGSLVMS
CNFDGSNKTQKYYSGSSIFWGIASFNSILYVTDVHRRIDHTGSLYYHLWWIPKGRNQKGR
LNVGNYKLVGKPRGVTVMAQQTEQSPLDQVLAVGSCQASPACSQICLPRINATRECVCSI
GYTKQGDTGCVTKSVGNKYMLISDAGQGKIFRVSLDNSSSNYSVFQMALASKVTFMTNDG
GAGNFIFWSDEKQLKIFKSTINGATARTLVDKVHARFLSFEPLDGNLFYIDDDTQYIAFA
DAINGYVTTIMKPDRAERNRTSIRQLTLDLQMKKVYWTNTRSANDQGQIWRMNYDGSNKE
LVFNYLNWPHGITIDQKNRTLYFTESKRSEIYAVPLASLTNVTGAIPASRTKYSLASTKR
KNGIITEIQVINNLIYFNDRSNNYMEVIDPNADNPGASPFGPRDFYRIRSMVYYDTSYFL
QYINKLGRPCALKGCSKNCVALSRGTSKCLCQDGFSFLTPNICTNDGTHRPDNPPSYGLT
CPSSKDRTLPPCSNSTTFSWATPAWTDDITATSNLTLTSPSTTSPATLGPGYYEFSYTAT
DESGNVGHCTFYFTITQTQCRARQGLGTDILESSTICGDDGPEYNISCVSPNQMLRYGGQ
TRAYMTNRCFSSGEWMYPDLNGLQCVTVTSTTTTTTARTTTIATTTTMPTTTRTTTAAAP
PKTTKKGQTKTTAKTSASTTTATSAVQATKESPAPVGLSAGATAAIVILVIVFVAVVVVV
VVQYVRNGKRGVGMIIPVFWKPKEDTINLQNDMDDGNHYSVL
Nucleotide sequence
Length: 2,649
>Phfumi.CG.MTP2014.S11.g00239.02.t
ATGGGACATGGAATTGAGAGCATAGCTTACGACTGGAGGAATGAGAACCTCTATCTCACC
GATTCATCGCTGAAATGGGTTCTGGTTGCTGACAATCAGTTCCAGTATTACGCCTCAATC
TACAAGTCCGACCCTGACCCAGCTTACGGCCTTGCTCTTCACGCCATGCGAAGATTTTTG
TTTTTCTCTACTTACAAGTCACGTGGTTCGAAAATCATCCGAACAGATTTGGCGGGAAAA
AACGCGACCACGTTGTTCGCATATCCCGACGTGCATGACGTCACCGGTATGACGGTAGAT
TATGCAGATGAGAAATTGTACTGGACGGATTTTACCGGTTACGGCAGTTTGGTGATGAGT
TGCAACTTTGACGGAAGCAACAAAACGCAGAAGTACTACAGCGGATCTTCCATCTTCTGG
GGAATCGCTTCATTTAACAGCATTCTATACGTCACCGACGTCCACCGTCGCATCGACCAC
ACGGGGTCGCTGTACTACCATCTGTGGTGGATCCCCAAAGGCAGGAATCAGAAGGGGCGA
TTGAATGTGGGTAACTACAAACTGGTGGGAAAACCCCGCGGGGTCACTGTGATGGCACAA
CAGACCGAACAATCTCCATTGGATCAAGTTCTCGCCGTCGGATCGTGCCAAGCCTCCCCT
GCCTGTTCCCAGATCTGTCTCCCCCGGATCAACGCAACCAGAGAATGCGTGTGCTCCATC
GGATACACCAAGCAGGGGGATACCGGTTGCGTCACAAAGTCTGTCGGCAACAAGTACATG
TTGATCAGCGATGCGGGACAGGGAAAAATATTCAGAGTATCACTCGACAACTCGTCATCG
AACTACTCTGTCTTCCAAATGGCCCTAGCTTCGAAGGTGACCTTTATGACGAACGATGGT
GGAGCAGGAAATTTCATCTTCTGGTCGGATGAAAAACAACTGAAGATATTTAAATCCACA
ATTAACGGAGCCACTGCAAGAACGCTCGTCGACAAAGTGCACGCTCGATTTTTGTCGTTC
GAGCCTTTGGACGGAAATCTTTTCTACATTGATGACGACACGCAGTACATCGCGTTCGCT
GACGCAATCAACGGTTACGTCACAACGATAATGAAGCCGGATCGCGCGGAGAGGAACAGA
ACAAGCATTCGACAACTGACGCTCGACTTGCAAATGAAGAAAGTTTATTGGACCAATACA
CGAAGTGCGAATGACCAGGGACAGATTTGGAGGATGAATTATGACGGATCTAACAAGGAA
CTTGTCTTCAACTACCTCAACTGGCCACACGGAATCACTATTGACCAGAAAAACCGAACT
CTCTATTTCACCGAATCCAAACGATCGGAAATTTACGCTGTACCTCTCGCGTCACTGACA
AACGTCACAGGGGCAATCCCCGCAAGTAGAACCAAGTACAGCCTGGCGTCGACAAAACGG
AAGAACGGGATTATAACAGAAATACAAGTGATCAACAACCTGATCTACTTCAACGACAGA
AGCAACAATTACATGGAAGTGATCGATCCCAACGCCGACAACCCAGGGGCTTCCCCGTTT
GGACCCAGGGACTTTTACCGGATTCGGAGCATGGTTTATTACGATACAAGTTACTTCCTG
CAGTACATAAATAAACTTGGACGACCATGCGCTTTAAAGGGATGCAGCAAGAACTGCGTG
GCTTTGTCGCGAGGAACTTCCAAATGTTTATGTCAGGATGGATTCAGCTTCCTAACCCCA
AACATCTGCACAAACGATGGAACGCACAGACCGGACAACCCTCCATCATACGGGCTGACA
TGCCCCTCCAGTAAAGACCGCACTCTCCCCCCTTGCTCGAACTCGACAACATTCTCATGG
GCAACGCCCGCATGGACCGACGACATTACAGCAACAAGCAACTTGACGCTTACGTCACCA
TCAACCACGTCACCAGCCACATTGGGCCCTGGCTATTATGAGTTCAGTTATACGGCAACA
GATGAATCAGGAAATGTTGGCCATTGCACATTCTATTTCACCATCACACAAACCCAGTGT
CGTGCCCGGCAGGGATTGGGAACAGATATATTAGAATCATCAACAATTTGTGGTGACGAC
GGTCCAGAGTACAACATTTCCTGCGTTTCACCCAACCAAATGTTGCGATATGGAGGTCAA
ACGAGAGCGTACATGACCAACCGCTGTTTTAGCTCTGGTGAATGGATGTATCCTGATCTT
AATGGACTTCAGTGTGTCACAGTCACCAGTACAACAACAACTACAACTGCTAGAACAACT
ACAATTGCTACAACAACAACAATGCCAACTACAACCAGGACAACAACAGCAGCAGCACCA
CCCAAAACAACAAAAAAAGGACAGACAAAAACTACAGCAAAAACAAGCGCATCAACAACT
ACAGCAACAAGCGCTGTGCAAGCAACTAAAGAGTCTCCAGCCCCAGTTGGATTGAGTGCT
GGTGCAACTGCTGCTATTGTGATTCTCGTCATTGTGTTTGTTGCAGTTGTAGTTGTCGTG
GTTGTGCAATATGTCAGAAATGGAAAAAGAGGAGTTGGAATGATAATTCCTGTATTCTGG
AAACCAAAAGAAGACACGATTAATCTTCAAAATGACATGGATGATGGAAACCATTATTCT
GTGCTTTGA
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[2-248] 7.3E-36 - T[249-589] 2.7E-37 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[15-57] 4.981 - T[58-103] 6.397 - T[104-128] 6.838 - T[304-330] 7.812 - T[393-438] 11.177 - T[856-882] 4.587 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[38-82] 8.6 - T[83-128] 5.0E-6 - T[327-367] 72.0 - T[368-419] 0.048 - T[421-461] 34.0 |
| SMART |
EGF-like_dom (IPR000742) - T[215-251] 13.0 - T[549-584] 3.1 |
| ProSiteProfiles |
HYR_dom (IPR003410) - T[591-677] 16.582 |
| Pfam |
HYR_dom (IPR003410) - T[594-675] 1.1E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 22.428 % | 97.4 | 1.91E-20 |
| LRP4_HUMAN | 22.026 % | 94.4 | 1.67E-19 |
| LRP5_HUMAN | 23.092 % | 97.1 | 2.44E-20 |