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TRANSCRIPT CARD

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  1. Clone 'cijv032m16' > 
  2. Transcript 'KH2012:KH.C2.118.v1....' > 
  3. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  4. Clone 'cilv002b19' > 
  5. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S12155.g08916.01.t

Possible name(s)

DYSF; FER1L6; OTOF

Gene model

Phfumi.CG.MTP2014.S12155.g08916

Location

S12155 [756 / 4,576]

Sequences

Amino acid sequence

Length: 422

>Phfumi.CG.MTP2014.S12155.g08916.01.p
RTFDFEATFPMESALTVQVYDWDLLSADDLIGETKIDLENRFYSKHRALCGIAEKYSIFG
YNQWRDPMKPSEILKKLCKDLKVDGPHFSPGKVRVGKKVFSGPIELEDENGHKKPSDEHV
ALVALRHWDEISKVGCTLVPEHVETRSLYSPEKPGIEQGRLELWIDMFPMDMPLPGLPVD
VSPRKPRGWLLGDDKQETDIHYRSLTGEGNFNWRFIFPFDYLIAEEKIVVTKKESMFSWD
ETEFKMPPRLNLQVWDADHFSADDFLGSLTLDLTRMPRGAKSANKCSLNLASEEEDSSDV
PMVSLFKQRRIKGWWPFTAKNNEDELEITGKLEAEITLMTAEEAEKNPAGLARDEPDPLE
KPNRPDTSFVWFMNPLKSLRYLICARFKWLIIKVFILLLLIALLVLFIYSSPSWLMKKIL
GA

Nucleotide sequence

Length: 1,269

>Phfumi.CG.MTP2014.S12155.g08916.01.t
AGGACATTCGACTTTGAAGCAACGTTTCCCATGGAAAGTGCCCTTACAGTTCAAGTTTAC
GATTGGGATTTGCTTAGCGCCGACGACTTGATCGGAGAAACCAAGATCGATTTGGAAAAT
CGTTTTTACAGCAAACACAGGGCGTTGTGTGGAATCGCAGAGAAATATTCCATTTTCGGC
TACAACCAGTGGCGTGATCCGATGAAACCGTCTGAGATACTGAAAAAACTTTGCAAGGAT
TTAAAGGTTGACGGTCCACACTTTTCACCAGGCAAGGTTCGAGTCGGCAAAAAAGTCTTC
TCTGGTCCCATCGAACTGGAAGATGAAAACGGTCACAAGAAACCATCTGACGAACACGTG
GCTCTGGTTGCACTGCGTCACTGGGACGAAATATCCAAGGTCGGATGTACCCTGGTCCCC
GAGCACGTCGAAACCAGATCTTTGTACAGTCCTGAAAAGCCCGGAATCGAGCAGGGTCGA
TTAGAGTTGTGGATTGACATGTTCCCGATGGACATGCCTCTTCCCGGTCTCCCCGTTGAC
GTTTCACCACGAAAACCCAGAGGGTGGTTGCTAGGCGACGATAAGCAGGAGACCGATATC
CATTACCGCTCACTTACGGGGGAAGGCAACTTCAACTGGAGGTTCATCTTTCCATTCGAT
TATCTAATCGCCGAAGAAAAGATCGTTGTCACTAAAAAGGAGTCGATGTTTTCATGGGAT
GAGACGGAGTTCAAAATGCCTCCAAGATTAAACTTGCAGGTTTGGGACGCAGATCACTTC
TCGGCCGATGACTTCCTTGGTTCGCTGACTCTGGATCTGACCCGTATGCCGCGCGGTGCC
AAGTCAGCAAACAAATGCAGCTTGAACCTGGCGTCGGAGGAAGAGGACAGTTCGGATGTT
CCGATGGTTTCCCTCTTCAAACAACGCAGAATCAAAGGCTGGTGGCCGTTTACTGCCAAA
AACAACGAGGACGAGCTTGAGATTACAGGGAAACTGGAGGCGGAGATTACACTAATGACG
GCGGAGGAGGCGGAGAAGAATCCCGCTGGACTTGCAAGAGATGAACCAGACCCACTGGAG
AAACCCAATCGCCCCGATACTTCCTTCGTGTGGTTCATGAATCCTCTAAAGTCCCTGCGT
TATTTGATCTGCGCCCGATTCAAGTGGCTCATCATCAAAGTTTTCATTCTCCTGCTCCTG
ATCGCCCTCCTTGTCCTTTTCATCTATTCCTCGCCGAGCTGGCTCATGAAGAAAATCCTC
GGAGCTTAA

InterProScan

Gene3D
C2_domain_sf (IPR035892) - T[1-61] 1.8E-7 - T[187-306] 2.9E-14
CDD
C2E_Ferlin (IPR037724) - T[1-74] 1.42622E-39
PANTHER
Ferlin (IPR037721) - T[2-188] 1.5E-225 - T[187-421] 1.5E-225
PANTHER
Otoferlin (IPR029996) - T[2-188] 1.5E-225 - T[187-421] 1.5E-225
Pfam
C2_dom (IPR000008) - T[2-40] 4.6E-6 - T[237-282] 3.7E-4
CDD
C2F_Ferlin (IPR037725) - T[187-288] 8.64885E-62
Pfam
Ferlin_C (IPR032362) - T[329-419] 1.1E-25

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OTOF_HUMAN 65.939 % 623 0
FR1L6_HUMAN 53.947 % 474 8.9E-153
FR1L4_HUMAN 42.857 % 363 6.28E-113