- Transcript 'KH2012:KH.L133.9.v1....' >
- Transcript 'KH2012:KH.C2.36.v2.A...' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S12.g00244.01.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S12 [2,742 / 14,640]
Amino acid sequence
Length: 909
>Phfumi.CG.MTP2014.S12.g00244.01.p
MRSVDLRGHVKLSQLTIMSTRFTSNRKKTKGPCGGRDCSNLGECAFCISEKGRRGPTGVP
GFSGINGVPGHPGEQGLRGFPGENGCNGTKGDLGEEGPPGRGGLDGDDGEFGPKGQKGEP
AIIKDENMIKGEPGNDGPAGPVGPQGTPGRIGPIGPRGFDGSPGPPGNPGPKGLRGENGL
KGIGFQGEKGMKGEPGPPGTPGGQGFASGPKPTEIFPVPGPPGNDGQKGQKGERGMSGDV
GFPGPTGFKGMRGGKGEKGVRGLAGPRGRPGIPGVSGYNGDKGEQGEIGQKGTTGSEGMK
GERGMQGPEGPFGQPGLMGLQGPLGPPGLPGETGFQGPPGSAGQSGVEGLPGESGDDGLQ
GPPGLPGSPGLPGVGEKGQAGAKGFPGANGQDGAIGLPGLAGRKGERGPPGETIPGTNGR
DGTPGPAGEPGKVGGRGPPGEPGRIVSPSMDGPMIGPPGPPGLRGPVGENGLKGVKGLYG
FPGPKGNKGGECDCQDAVGEKGERGPVGLKGLDGLPGLPGLAGQRGDQGEPGELGPIGEI
GFAGPRGKPGPTGIKGTKGEPATIQDGISAEKGEPGLPGGQGPPGEMGLPGRDGPNGRNG
VKGEKGEVGPTGLPGIEGLKGFGGAQGPDGLPGRDGFGFPGPIGNKGEKGGFGPPGPRGY
EGAKGKCVCCVGSQGELIINEAPKGLKGNYGERGPRGRQGLKGEKGTRGPDGSIGPNGEN
GAPGQTGLPGPPGLAGEKGFTGPRGEKGEIGVPGSIGVRGITGQDGFDGFNGEKGERGMS
LQGLAGRRGQKGNPGAAGPIGEPGITGLTGPQGIPGTQGLPGLDGEPGPPGIQGFDGPQG
EKGESALIGRQGPPGEDGPQGYDGRQGPRGEKGEIGPPGPAASGILKGVKGAPGLPGIQG
SFNGECEIC
Nucleotide sequence
Length: 5,226
>Phfumi.CG.MTP2014.S12.g00244.01.t
ATGAGAAGCGTGGACCTACGAGGTCACGTAAAATTGTCGCAACTGACCATCATGTCAACC
CGCTTCACTTCTAATAGAAAGAAAACCAAGGGACCATGTGGAGGGCGCGACTGCTCCAAT
TTGGGTGAATGTGCCTTCTGCATTTCCGAAAAGGGACGCCGGGGACCGACAGGAGTTCCC
GGTTTTTCTGGGATCAATGGCGTTCCTGGACATCCCGGAGAACAGGGTCTTCGCGGATTT
CCAGGAGAAAACGGCTGCAACGGAACAAAGGGAGATTTGGGTGAAGAGGGTCCCCCAGGC
CGTGGTGGGTTGGATGGAGATGATGGAGAATTCGGTCCCAAAGGCCAAAAAGGAGAGCCA
GCCATCATAAAAGATGAGAATATGATCAAAGGCGAACCTGGAAATGATGGACCTGCGGGG
CCAGTTGGTCCCCAAGGAACTCCAGGAAGAATTGGCCCCATCGGTCCGAGAGGTTTTGAT
GGTTCTCCTGGACCACCGGGTAATCCTGGACCGAAAGGTCTTAGGGGAGAGAACGGCCTG
AAAGGGATTGGCTTTCAAGGCGAGAAAGGAATGAAAGGAGAACCTGGACCTCCAGGCACC
CCGGGCGGCCAAGGATTTGCGTCTGGTCCGAAACCAACCGAGATATTTCCTGTCCCAGGG
CCCCCAGGAAACGATGGGCAAAAGGGACAAAAAGGTGAACGTGGAATGTCTGGAGACGTC
GGATTTCCTGGACCAACCGGTTTCAAAGGAATGAGAGGCGGGAAAGGAGAAAAGGGCGTG
AGAGGTTTAGCTGGACCCCGCGGCAGGCCAGGTATACCTGGTGTGTCTGGCTACAATGGG
GACAAAGGAGAGCAAGGTGAAATTGGCCAGAAAGGAACGACAGGTTCAGAAGGAATGAAA
GGGGAACGTGGAATGCAAGGACCAGAAGGACCGTTCGGACAACCTGGTTTAATGGGTCTG
CAAGGACCCCTCGGACCTCCTGGTTTGCCAGGGGAGACTGGGTTCCAAGGGCCACCTGGT
TCGGCCGGACAGTCTGGTGTTGAAGGCTTACCTGGTGAATCCGGTGACGACGGACTACAG
GGTCCTCCTGGTTTGCCTGGCAGTCCAGGCCTGCCTGGCGTTGGTGAAAAGGGCCAAGCT
GGCGCAAAAGGATTTCCTGGTGCCAATGGACAAGACGGAGCGATTGGACTTCCTGGTCTT
GCTGGTCGGAAAGGGGAAAGGGGGCCTCCAGGAGAAACAATTCCAGGAACTAACGGTCGT
GACGGTACGCCTGGTCCTGCTGGAGAACCCGGTAAAGTTGGTGGTCGAGGTCCACCTGGT
GAACCTGGAAGAATTGTTTCACCGTCGATGGACGGCCCCATGATTGGACCACCTGGGCCA
CCCGGTCTGAGAGGACCGGTGGGCGAAAATGGGTTGAAAGGTGTAAAGGGTTTGTACGGT
TTTCCTGGACCGAAAGGAAACAAAGGTGGTGAATGTGATTGTCAAGACGCAGTAGGAGAA
AAGGGAGAGCGGGGTCCAGTCGGACTAAAAGGTTTGGATGGTTTACCGGGATTGCCTGGT
CTAGCAGGTCAGCGTGGCGACCAGGGCGAACCTGGAGAGTTAGGACCAATTGGAGAAATT
GGATTTGCTGGACCACGAGGAAAGCCAGGACCAACAGGAATAAAAGGTACCAAGGGCGAG
CCAGCTACTATCCAAGATGGCATTTCCGCTGAAAAGGGCGAGCCTGGTTTACCTGGTGGG
CAAGGACCGCCGGGAGAAATGGGTTTACCAGGAAGAGATGGTCCCAATGGCCGTAATGGT
GTCAAGGGAGAAAAGGGCGAAGTTGGGCCGACAGGTTTACCAGGAATCGAAGGCTTGAAG
GGATTTGGTGGTGCTCAAGGACCAGATGGGCTACCCGGAAGAGATGGGTTCGGTTTTCCC
GGACCTATAGGCAATAAAGGAGAAAAGGGAGGTTTTGGACCACCGGGGCCACGGGGATAT
GAAGGAGCAAAAGGCAAGTGTGTTTGCTGTGTAGGTTCACAGGGTGAACTAATAATAAAC
GAAGCACCGAAGGGCTTGAAAGGAAACTATGGGGAGAGAGGTCCACGTGGAAGGCAGGGA
CTAAAGGGTGAAAAGGGGACTAGGGGACCAGATGGAAGCATAGGACCAAATGGTGAAAAT
GGTGCACCCGGTCAAACTGGACTACCAGGACCACCAGGTCTAGCAGGGGAAAAAGGTTTT
ACTGGACCTCGGGGTGAAAAGGGTGAAATTGGGGTTCCAGGTTCCATAGGAGTACGTGGT
ATTACTGGACAGGACGGATTTGATGGATTTAATGGTGAAAAGGGAGAGAGGGGCATGTCA
CTCCAAGGTCTTGCAGGCAGGCGTGGACAAAAGGGAAACCCGGGAGCCGCTGGCCCAATT
GGGGAACCGGGAATTACTGGATTGACTGGTCCGCAGGGTATTCCTGGCACTCAGGGTCTT
CCTGGGTTGGATGGAGAACCTGGACCACCCGGTATACAAGGATTCGACGGACCTCAAGGT
GAAAAAGGGGAGTCAGCGCTTATCGGCCGACAAGGTCCCCCTGGGGAAGACGGACCTCAG
GGATACGATGGACGTCAAGGTCCCAGAGGCGAGAAGGGAGAGATTGGTCCACCTGGGCCA
GCAGCAAGTGGTATTTTAAAAGGCGTTAAGGGAGCACCGGGTCTACCTGGAATTCAAGGT
TCGTTTAATGGGGAGTGTGAAATATGTTGATTCGTTTTTAAGTTTAATGTACCGATGTTA
GGTCGAACCGGTTTACTGGGGTCAGAAGGTCCACCCGGAACCAATGGACTTGATGGTCGA
GATGGTCAAGATGGCCTTCGGGGACCTAAAGGCTCCAAAGGCCCTCCAGGTTCACAAGGC
CCACCAGGTGAACCAGGAAAAGACGGTATCGATGGCGCAGAGGGATTGGAAGGTTTGGGT
GGAATGAGTGGTATACCTGGGACCAAGGGAGAAAGAGGATTACGAGGTTTCGAAGGATTG
AAGGGTGCCAAGGGGGCAAAGGGCACCATGGGCCCAGCTGAACTACAAGCTTTAAGAGGA
TATCCTGGCGCACAAGGAGACCGAGGAGAGCCGGGGCTCGATGGATATAATGGAAAACCT
GGACCCGTCGGCGTTACTGGCCAACAGGGCGAGACAGGTCCTCCTGGCCCGCCCGGTGAG
CCTGGAGTTCCCGGTGAAAACGGCCAGAACGGATTTGCTGGCAACAAGGGTGAGAAGGGA
CAAAGAGGCGAAAGAGGTGCGGTTGGATTCCCAGGTGTTTTCGGAAAAACAGGACAAAAA
GGTTATCCCGGTCTTGATGGCGCGATTGGTTTCCCTGGACCTAAGGGCTCTAAAGGTGAC
GTAGGAGAACCGGGACCAAAAGGTCGAAATGGATTTCCAGGGTTGAACGGGGAGAACGGA
AAACCGGGAAGACAAGGATTGCCGGGAAGGGAAGGAACACCTGGAATGGACGGACTCCAC
GGAGCGCCGGGTCTGAAAGGGGAAAGGGGTGACGTTGGCCAGCCCGGATTTACTGGAATC
CGAGGTTTTCCTGGAAACAAAGGTTCTCCAGGATCGCGAGGTCTTGATGGCTTGCCTGGG
GACTTTGGGGTTCCTGGAGTCAAAGGAGCTAAAGGCGAGAAAGGAACTTCTGGATTACCG
GGACCCAACGGATTTGATGGTTTAAACGGAGAACCTGGTCCAAAAGGATATCCTGGAAAA
TCAACCGTTCCAGGACCGAAGGGGACCCGCGGTCCACAAGGATTCAAAGGTGAAGTTGGA
GATGAAGGCATCCAAGGAAGAGACGGACCACGGGGCTTACAAGGACTTACTGGACCCTCA
GGTGTGAAAGGCGTGCCTGGTCCCCGAGGTGCTCCAGGAGATATTGGTGTACCTGGTTTC
CCTGGTGTCACGGGTGAGCGCGGAGAGACAGGAATAGGTGGATTTCCAGGAGACCAAGGA
CGCCCCGGTCTGCAAGGTCAACAAGGCCACGTCGGACGAAGAGGCCACAAAGGCTCCAAA
GGAGTGCCTGGCGAGCAGGGTTTAAACGGCCTTGATGGACTTCCCGGTCCTGTCGGAGAA
GATGGAATTCCTGGCCGAATCGGAATACCAGGGACTAAAGGTGGCAAAGGCGACAAAGGC
GCACAAGGATTGGTTGGATCAGTAGGTGAAAAGGGTGTCATAGGCTTTCCTGGTACATCC
GGCCTTCCTGGTCACCCAGGTCCGACTGGGGAACGTGGCGCACAGGGACCTCCAGGCATA
TCCATTGAACCATCCCGGTTAATACCGGGAGACAAAGGAGAAACGGGACTTCAAGGGCTT
CAAGGTTATCCTGGTTCCAAAGGAAGAGCTGGACTTCCAGGTCCGAGGGGTTTTAAGGGA
GAGCCCGGTGAACGTGGTATGGATGGAAGAGACGGAATTCCTGGGACTCACGGACAAAGA
GGAAACTCCGGACCACAGGGCTTTACTGGTCCAAAGGGATTACCTGGAAGCGATGGAACA
CCAGGTCTACAGGGTGCTTCAGGAAAAGCTGGCCGAGTGAGGCCTCCAGGTCACATTATA
GTCAAACACAGCCAAACTGTCGATGTGCCAGAATGTCCTGTTGGCATGAACAAGTTATGG
GACGGCTTCAGTTTACTCTACCTTGAAGGCAGTGAAAAGGCACATGGACAGGATTTAGGT
CAGTCAGGTTCTTGTATGCGTCGTTTTAGCACGATGCCATTTTTGTATTGCAACAATAAC
AACGTATGCAAGTACGGAAGCAGAAACGACAAATCGTATTGGTTGTCAACCACGGCACCC
ATTCCTATGATGCCAGTGGCGGTGGACATGGTCCAAGAGCACATCAGTAGATGTTCCGTG
TGTGAATCTCGGTCAGTTGCAATGGCTGTTCACAGCCAAGATATGGTCGTACCACCGTGT
CCCTCTGGATGGAAGGGACTGTGGTTTGGATACAGTTTCGCTATGCACACCGCTGCTGGT
GCAGAAGGAAGTGGCCAATCGTTGTCAAGCCCAGGTTCGTGTTTGCAAGATTTCAGAGCA
ACACCGTTCATCGAATGTAACGGGGCCAGAGGACATTGCTTCTACTATAACAACCAGTAC
AGCTTTTGGCTTTCGACAATAACGCCCGACGAACAATTTGACACGCCACCTATGGAAACT
TTGAAAGCGGGCAACCTTAGAATGAGAATAAGCAGATGTCAAGTCTGTACGAGAATAAAC
GCCTAA
| Pfam |
Collagen (IPR008160) - T[51-101] 5.4E-7 - T[64-119] 5.3E-8 - T[131-182] 6.6E-8 - T[219-274] 2.3E-8 - T[274-329] 2.3E-7 - T[685-741] 3.1E-9 - T[724-778] 6.0E-8 - T[786-844] 2.1E-9 - T[822-880] 1.2E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 38.901 % | 268 | 1.16E-74 |
| CO4A2_HUMAN | 47.02 % | 573 | 0 |
| CO4A1_HUMAN | 43.006 % | 511 | 9.71E-162 |
| CO4A6_HUMAN | 41.556 % | 564 | 0 |