- Transcript 'KH2012:KH.C1.1279.v1...' >
- Transcript 'Cisavi.CG.ENS81.R49....' >
- Clone 'csma085b12' >
- Clone 'cicl005c22' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S12.g00244.02.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S12 [2,742 / 16,451]
Amino acid sequence
Length: 1,762
>Phfumi.CG.MTP2014.S12.g00244.02.p
IMTRKNAISWHCICVVILCSTYLLQVEADRKKTKGPCGGRDCSNLGECAFCISEKGRRGF
PGKLGSEGPQGETGFPGPEGLMGPKGYPGSDGFAGRKGEKGDRGPTGVPGFSGINGVPGH
PGEQGLRGFPGENGCNGTKGDLGEEGPPGRGGLDGDDGEFGPKGQKGEPAIIKDENMIKG
EPGNDGPAGPVGPQGTPGRIGPIGPRGFDGSPGPPGNPGPKGLRGENGLKGIGFQGEKGM
KGEPGPPGTPGGQGFASGPKPTEIFPVPGPPGNDGQKGQKGERGMSGDVGFPGPTGFKGM
RGGKGEKGVRGLAGPRGRPGIPGVSGYNGDKGEQGEIGQKGTTGSEGMKGERGMQGPEGP
FGQPGLMGLQGPLGPPGLPGETGFQGPPGSAGQSGVEGLPGESGDDGLQGPPGLPGSPGL
PGVGEKGQAGAKGFPGANGQDGAIGLPGLAGRKGERGPPGETIPGTNGRDGTPGPAGEPG
KVGGRGPPGEPGRIVSPSMDGPMIGPPGPPGLRGPVGENGLKGVKGLYGFPGPKGNKGGE
CDCQDAVGEKGERGPVGLKGLDGLPGLPGLAGQRGDQGEPGELGPIGEIGFAGPRGKPGP
TGIKGTKGEPATIQDGISAEKGEPGLPGGQGPPGEMGLPGRDGPNGRNGVKGEKGEVGPT
GLPGIEGLKGFGGAQGPDGLPGRDGFGFPGPIGNKGEKGGFGPPGPRGYEGAKGSQGELI
INEAPKGLKGNYGERGPRGRQGLKGEKGTRGPDGSIGPNGENGAPGQTGLPGPPGLAGEK
GFTGPRGEKGEIGVPGSIGVRGITGQDGFDGFNGEKGERGMSLQGLAGRRGQKGNPGAAG
PIGEPGITGLTGPQGIPGTQGLPGLDGEPGPPGIQGFDGPQGEKGESALIGRQGPPGEDG
PQGYDGRQGPRGEKGEIGPPGPAASGILKGVKGAPGLPGIQGRTGLLGSEGPPGTNGLDG
RDGQDGLRGPKGSKGPPGSQGPPGEPGKDGIDGAEGLEGLGGMSGIPGTKGERGLRGFEG
LKGAKGAKGTMGPAELQALRGYPGAQGDRGEPGLDGYNGKPGPVGVTGQQGETGPPGPPG
EPGVPGENGQNGFAGNKGEKGQRGERGAVGFPGVFGKTGQKGYPGLDGAIGFPGPKGSKG
DVGEPGPKGRNGFPGLNGENGKPGRQGLPGREGTPGMDGLHGAPGLKGERGDVGQPGFTG
IRGFPGNKGSPGSRGLDGLPGDFGVPGVKGAKGEKGTSGLPGPNGFDGLNGEPGPKGYPG
KSTVPGPKGTRGPQGFKGEVGDEGIQGRDGPRGLQGLTGPSGVKGVPGPRGAPGDIGVPG
FPGVTGERGETGIGGFPGDQGRPGLQGQQGHVGRRGHKGSKGVPGEQGLNGLDGLPGPVG
EDGIPGRIGIPGTKGGKGDKGAQGLVGSVGEKGVIGFPGTSGLPGHPGPTGERGAQGPPG
ISIEPSRLIPGDKGETGLQGLQGYPGSKGRAGLPGPRGFKGEPGERGMDGRDGIPGTHGQ
RGNSGPQGFTGPKGLPGSDGTPGLQGASGKAGRVRPPGHIIVKHSQTVDVPECPVGMNKL
WDGFSLLYLEGSEKAHGQDLGQSGSCMRRFSTMPFLYCNNNNVCKYGSRNDKSYWLSTTA
PIPMMPVAVDMVQEHISRCSVCESRSVAMAVHSQDMVVPPCPSGWKGLWFGYSFAMHTAA
GAEGSGQSLSSPGSCLQDFRATPFIECNGARGHCFYYNNQYSFWLSTITPDEQFDTPPME
TLKAGNLRMRISRCQVCTRINA
Nucleotide sequence
Length: 5,289
>Phfumi.CG.MTP2014.S12.g00244.02.t
ATTATGACTCGGAAGAACGCGATATCTTGGCATTGCATATGCGTTGTAATCCTGTGTTCC
ACATACCTGCTGCAAGTTGAAGCAGACAGAAAGAAAACCAAGGGACCATGTGGAGGGCGC
GACTGCTCCAATTTGGGTGAATGTGCCTTCTGCATTTCCGAAAAGGGACGCCGGGGTTTT
CCAGGTAAACTCGGAAGTGAAGGCCCTCAAGGTGAGACTGGTTTTCCAGGGCCTGAAGGT
TTAATGGGTCCGAAAGGTTACCCTGGCTCAGACGGCTTTGCCGGCAGAAAGGGCGAAAAA
GGAGACAGGGGACCGACAGGAGTTCCCGGTTTTTCTGGGATCAATGGCGTTCCTGGACAT
CCCGGAGAACAGGGTCTTCGCGGATTTCCAGGAGAAAACGGCTGCAACGGAACAAAGGGA
GATTTGGGTGAAGAGGGTCCCCCAGGCCGTGGTGGGTTGGATGGAGATGATGGAGAATTC
GGTCCCAAAGGCCAAAAAGGAGAGCCAGCCATCATAAAAGATGAGAATATGATCAAAGGC
GAACCTGGAAATGATGGACCTGCGGGGCCAGTTGGTCCCCAAGGAACTCCAGGAAGAATT
GGCCCCATCGGTCCGAGAGGTTTTGATGGTTCTCCTGGACCACCGGGTAATCCTGGACCG
AAAGGTCTTAGGGGAGAGAACGGCCTGAAAGGGATTGGCTTTCAAGGCGAGAAAGGAATG
AAAGGAGAACCTGGACCTCCAGGCACCCCGGGCGGCCAAGGATTTGCGTCTGGTCCGAAA
CCAACCGAGATATTTCCTGTCCCAGGGCCCCCAGGAAACGATGGGCAAAAGGGACAAAAA
GGTGAACGTGGAATGTCTGGAGACGTCGGATTTCCTGGACCAACCGGTTTCAAAGGAATG
AGAGGCGGGAAAGGAGAAAAGGGCGTGAGAGGTTTAGCTGGACCCCGCGGCAGGCCAGGT
ATACCTGGTGTGTCTGGCTACAATGGGGACAAAGGAGAGCAAGGTGAAATTGGCCAGAAA
GGAACGACAGGTTCAGAAGGAATGAAAGGGGAACGTGGAATGCAAGGACCAGAAGGACCG
TTCGGACAACCTGGTTTAATGGGTCTGCAAGGACCCCTCGGACCTCCTGGTTTGCCAGGG
GAGACTGGGTTCCAAGGGCCACCTGGTTCGGCCGGACAGTCTGGTGTTGAAGGCTTACCT
GGTGAATCCGGTGACGACGGACTACAGGGTCCTCCTGGTTTGCCTGGCAGTCCAGGCCTG
CCTGGCGTTGGTGAAAAGGGCCAAGCTGGCGCAAAAGGATTTCCTGGTGCCAATGGACAA
GACGGAGCGATTGGACTTCCTGGTCTTGCTGGTCGGAAAGGGGAAAGGGGGCCTCCAGGA
GAAACAATTCCAGGAACTAACGGTCGTGACGGTACGCCTGGTCCTGCTGGAGAACCCGGT
AAAGTTGGTGGTCGAGGTCCACCTGGTGAACCTGGAAGAATTGTTTCACCGTCGATGGAC
GGCCCCATGATTGGACCACCTGGGCCACCCGGTCTGAGAGGACCGGTGGGCGAAAATGGG
TTGAAAGGTGTAAAGGGTTTGTACGGTTTTCCTGGACCGAAAGGAAACAAAGGTGGTGAA
TGTGATTGTCAAGACGCAGTAGGAGAAAAGGGAGAGCGGGGTCCAGTCGGACTAAAAGGT
TTGGATGGTTTACCGGGATTGCCTGGTCTAGCAGGTCAGCGTGGCGACCAGGGCGAACCT
GGAGAGTTAGGACCAATTGGAGAAATTGGATTTGCTGGACCACGAGGAAAGCCAGGACCA
ACAGGAATAAAAGGTACCAAGGGCGAGCCAGCTACTATCCAAGATGGCATTTCCGCTGAA
AAGGGCGAGCCTGGTTTACCTGGTGGGCAAGGACCGCCGGGAGAAATGGGTTTACCAGGA
AGAGATGGTCCCAATGGCCGTAATGGTGTCAAGGGAGAAAAGGGCGAAGTTGGGCCGACA
GGTTTACCAGGAATCGAAGGCTTGAAGGGATTTGGTGGTGCTCAAGGACCAGATGGGCTA
CCCGGAAGAGATGGGTTCGGTTTTCCCGGACCTATAGGCAATAAAGGAGAAAAGGGAGGT
TTTGGACCACCGGGGCCACGGGGATATGAAGGAGCAAAAGGTTCACAGGGTGAACTAATA
ATAAACGAAGCACCGAAGGGCTTGAAAGGAAACTATGGGGAGAGAGGTCCACGTGGAAGG
CAGGGACTAAAGGGTGAAAAGGGGACTAGGGGACCAGATGGAAGCATAGGACCAAATGGT
GAAAATGGTGCACCCGGTCAAACTGGACTACCAGGACCACCAGGTCTAGCAGGGGAAAAA
GGTTTTACTGGACCTCGGGGTGAAAAGGGTGAAATTGGGGTTCCAGGTTCCATAGGAGTA
CGTGGTATTACTGGACAGGACGGATTTGATGGATTTAATGGTGAAAAGGGAGAGAGGGGC
ATGTCACTCCAAGGTCTTGCAGGCAGGCGTGGACAAAAGGGAAACCCGGGAGCCGCTGGC
CCAATTGGGGAACCGGGAATTACTGGATTGACTGGTCCGCAGGGTATTCCTGGCACTCAG
GGTCTTCCTGGGTTGGATGGAGAACCTGGACCACCCGGTATACAAGGATTCGACGGACCT
CAAGGTGAAAAAGGGGAGTCAGCGCTTATCGGCCGACAAGGTCCCCCTGGGGAAGACGGA
CCTCAGGGATACGATGGACGTCAAGGTCCCAGAGGCGAGAAGGGAGAGATTGGTCCACCT
GGGCCAGCAGCAAGTGGTATTTTAAAAGGCGTTAAGGGAGCACCGGGTCTACCTGGAATT
CAAGGTCGAACCGGTTTACTGGGGTCAGAAGGTCCACCCGGAACCAATGGACTTGATGGT
CGAGATGGTCAAGATGGCCTTCGGGGACCTAAAGGCTCCAAAGGCCCTCCAGGTTCACAA
GGCCCACCAGGTGAACCAGGAAAAGACGGTATCGATGGCGCAGAGGGATTGGAAGGTTTG
GGTGGAATGAGTGGTATACCTGGGACCAAGGGAGAAAGAGGATTACGAGGTTTCGAAGGA
TTGAAGGGTGCCAAGGGGGCAAAGGGCACCATGGGCCCAGCTGAACTACAAGCTTTAAGA
GGATATCCTGGCGCACAAGGAGACCGAGGAGAGCCGGGGCTCGATGGATATAATGGAAAA
CCTGGACCCGTCGGCGTTACTGGCCAACAGGGCGAGACAGGTCCTCCTGGCCCGCCCGGT
GAGCCTGGAGTTCCCGGTGAAAACGGCCAGAACGGATTTGCTGGCAACAAGGGTGAGAAG
GGACAAAGAGGCGAAAGAGGTGCGGTTGGATTCCCAGGTGTTTTCGGAAAAACAGGACAA
AAAGGTTATCCCGGTCTTGATGGCGCGATTGGTTTCCCTGGACCTAAGGGCTCTAAAGGT
GACGTAGGAGAACCGGGACCAAAAGGTCGAAATGGATTTCCAGGGTTGAACGGGGAGAAC
GGAAAACCGGGAAGACAAGGATTGCCGGGAAGGGAAGGAACACCTGGAATGGACGGACTC
CACGGAGCGCCGGGTCTGAAAGGGGAAAGGGGTGACGTTGGCCAGCCCGGATTTACTGGA
ATCCGAGGTTTTCCTGGAAACAAAGGTTCTCCAGGATCGCGAGGTCTTGATGGCTTGCCT
GGGGACTTTGGGGTTCCTGGAGTCAAAGGAGCTAAAGGCGAGAAAGGAACTTCTGGATTA
CCGGGACCCAACGGATTTGATGGTTTAAACGGAGAACCTGGTCCAAAAGGATATCCTGGA
AAATCAACCGTTCCAGGACCGAAGGGGACCCGCGGTCCACAAGGATTCAAAGGTGAAGTT
GGAGATGAAGGCATCCAAGGAAGAGACGGACCACGGGGCTTACAAGGACTTACTGGACCC
TCAGGTGTGAAAGGCGTGCCTGGTCCCCGAGGTGCTCCAGGAGATATTGGTGTACCTGGT
TTCCCTGGTGTCACGGGTGAGCGCGGAGAGACAGGAATAGGTGGATTTCCAGGAGACCAA
GGACGCCCCGGTCTGCAAGGTCAACAAGGCCACGTCGGACGAAGAGGCCACAAAGGCTCC
AAAGGAGTGCCTGGCGAGCAGGGTTTAAACGGCCTTGATGGACTTCCCGGTCCTGTCGGA
GAAGATGGAATTCCTGGCCGAATCGGAATACCAGGGACTAAAGGTGGCAAAGGCGACAAA
GGCGCACAAGGATTGGTTGGATCAGTAGGTGAAAAGGGTGTCATAGGCTTTCCTGGTACA
TCCGGCCTTCCTGGTCACCCAGGTCCGACTGGGGAACGTGGCGCACAGGGACCTCCAGGC
ATATCCATTGAACCATCCCGGTTAATACCGGGAGACAAAGGAGAAACGGGACTTCAAGGG
CTTCAAGGTTATCCTGGTTCCAAAGGAAGAGCTGGACTTCCAGGTCCGAGGGGTTTTAAG
GGAGAGCCCGGTGAACGTGGTATGGATGGAAGAGACGGAATTCCTGGGACTCACGGACAA
AGAGGAAACTCCGGACCACAGGGCTTTACTGGTCCAAAGGGATTACCTGGAAGCGATGGA
ACACCAGGTCTACAGGGTGCTTCAGGAAAAGCTGGCCGAGTGAGGCCTCCAGGTCACATT
ATAGTCAAACACAGCCAAACTGTCGATGTGCCAGAATGTCCTGTTGGCATGAACAAGTTA
TGGGACGGCTTCAGTTTACTCTACCTTGAAGGCAGTGAAAAGGCACATGGACAGGATTTA
GGTCAGTCAGGTTCTTGTATGCGTCGTTTTAGCACGATGCCATTTTTGTATTGCAACAAT
AACAACGTATGCAAGTACGGAAGCAGAAACGACAAATCGTATTGGTTGTCAACCACGGCA
CCCATTCCTATGATGCCAGTGGCGGTGGACATGGTCCAAGAGCACATCAGTAGATGTTCC
GTGTGTGAATCTCGGTCAGTTGCAATGGCTGTTCACAGCCAAGATATGGTCGTACCACCG
TGTCCCTCTGGATGGAAGGGACTGTGGTTTGGATACAGTTTCGCTATGCACACCGCTGCT
GGTGCAGAAGGAAGTGGCCAATCGTTGTCAAGCCCAGGTTCGTGTTTGCAAGATTTCAGA
GCAACACCGTTCATCGAATGTAACGGGGCCAGAGGACATTGCTTCTACTATAACAACCAG
TACAGCTTTTGGCTTTCGACAATAACGCCCGACGAACAATTTGACACGCCACCTATGGAA
ACTTTGAAAGCGGGCAACCTTAGAATGAGAATAAGCAGATGTCAAGTCTGTACGAGAATA
AACGCCTAA
| Pfam |
Collagen (IPR008160) - T[111-169] 9.5E-8 - T[180-231] 1.5E-7 - T[268-323] 5.2E-8 - T[362-419] 2.3E-8 - T[554-609] 1.1E-8 - T[727-781] 4.5E-9 - T[766-820] 9.9E-9 - T[824-876] 9.0E-8 - T[864-922] 6.5E-9 - T[929-986] 1.2E-8 - T[969-1027] 1.1E-7 - T[1041-1096] 6.2E-9 - T[1383-1440] 2.7E-7 - T[1475-1533] 2.0E-9 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1535-1760] 7.2E-109 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1538-1645] 1.1E-59 - T[1646-1760] 3.4E-66 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1538-1761] 111.089 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1540-1646] 2.59E-42 - T[1647-1758] 5.89E-43 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1540-1643] 6.2E-36 - T[1648-1758] 2.0E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 46.234 % | 619 | 0 |
| CO4A1_HUMAN | 42.482 % | 533 | 2.77E-160 |
| CO4A6_HUMAN | 42.289 % | 745 | 0 |