- Transcript 'KH2012:KH.C4.515.v1....' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S13386.g09102.01.t
Possible name(s)
PCDH17; PCDH18; PCDH19
Gene model
Location
S13386 [595 / 4,561]
Amino acid sequence
Length: 703
>Phfumi.CG.MTP2014.S13386.g09102.01.p
LAADGLIGTGKKLDREDENKYKLVISACDKGTPARCTFSNVTVEVLDENDNAPEFEMPFY
EITLSEASKVGTNIITVSATDADAIKAPILRKNMDGEIVKSENGDVIYSIDSDDRYVTVD
SRSGKVTLIRPLDRERMAEIKVKILARDRGKPEALQSSCTLIITVMDVNDNSPIFTNPAL
DNSTVYATILNNDVVTQIQVVDYDDKENGKVQLVMESVDGMAEGQVKDGQAHYGFFVLDN
ATGELRLNLSREDAETLVGEHLVVFRAMDAGTPKRDTRINLFVQVSDSLLPLELTHGHRQ
KTGSSKITISTEFLIIVISLAAATLLLIVIIAVVVVKCKKDNKKVRTYNCQDAEHKRGWL
ARNTEGKQNEETKSTRTKPSSTNQDTASSVNETEPLTQQENSNVNSIKSKATRTTSDSTR
GSLSDLTSSSRQDYVTTYQVMSPGERPPTSLSTFSCEGKIAHAKIIGLIPPPPALSQNDG
DSGRGDSDPDSSSFSGTNEREFPKSLEILPYVTADVQNHKYDYAAPSSGSRCTEECLQFG
HSDVCWMPSPTQGSNNCAPTNHIQFQNEYNRVLETIEESSPPAEASTPYEYEPDIMREHV
RRSICRMASESRRHEQSPEMAAYHYDITERHNNPRWSDAARFSNSLSPSPAPSSGIGASS
QLSGVCDVNGVIRHQVYPHVDNSAVSMRETQEIINDIDKLLAH
Nucleotide sequence
Length: 2,112
>Phfumi.CG.MTP2014.S13386.g09102.01.t
CTGGCCGCGGACGGTTTAATTGGCACAGGGAAAAAGTTGGATAGAGAAGACGAGAATAAA
TACAAACTTGTTATATCGGCTTGCGACAAAGGAACACCTGCAAGGTGTACCTTTTCAAAC
GTAACGGTAGAGGTGCTGGATGAAAATGACAACGCGCCCGAATTTGAAATGCCCTTTTAC
GAAATCACTTTATCAGAAGCGTCAAAAGTTGGAACCAATATCATCACAGTTTCAGCCACA
GATGCAGACGCCATCAAGGCTCCAATATTGAGGAAAAACATGGATGGAGAGATTGTCAAG
TCCGAAAATGGTGACGTCATATACTCTATTGACTCAGACGATCGTTACGTCACTGTCGAC
TCAAGGTCAGGCAAGGTCACCCTGATTCGACCGCTGGACCGAGAACGCATGGCGGAAATT
AAGGTTAAAATTTTGGCGAGAGACCGAGGCAAACCAGAAGCTCTACAAAGCAGTTGCACT
TTGATAATTACTGTGATGGATGTGAACGACAACAGTCCGATCTTCACCAATCCTGCCCTG
GACAACTCGACTGTCTACGCTACGATTCTCAACAATGACGTTGTCACACAAATACAGGTG
GTTGATTACGATGACAAGGAGAATGGTAAAGTCCAGTTGGTCATGGAGAGTGTTGATGGG
ATGGCCGAGGGTCAAGTAAAGGATGGTCAGGCACATTATGGTTTTTTCGTACTCGACAAC
GCAACTGGCGAACTGAGACTTAATCTAAGCAGAGAAGACGCAGAGACACTTGTTGGAGAA
CATCTTGTTGTGTTTCGAGCAATGGATGCCGGGACCCCGAAACGTGATACTCGTATCAAC
TTATTCGTCCAAGTTTCCGATTCTCTTCTGCCTTTGGAGCTCACACACGGACATAGACAG
AAGACCGGGTCCTCTAAAATCACGATATCCACGGAATTTCTGATTATTGTGATTTCTTTG
GCTGCTGCTACTCTCCTACTGATCGTGATCATCGCTGTCGTCGTTGTAAAGTGCAAGAAA
GATAACAAGAAAGTCCGAACTTATAACTGTCAGGACGCCGAACACAAGAGGGGATGGTTG
GCTCGTAATACCGAAGGAAAACAGAATGAAGAAACGAAATCTACAAGGACTAAACCGTCC
AGCACCAATCAAGATACAGCTTCCAGTGTTAACGAAACTGAGCCACTAACACAACAGGAA
AACTCAAATGTTAACTCGATCAAGTCGAAAGCGACAAGAACTACATCCGACTCAACACGC
GGCTCTTTGTCTGACCTCACCTCTTCCTCACGTCAAGATTACGTCACAACCTACCAAGTG
ATGTCACCAGGCGAAAGACCACCGACGTCACTTAGTACGTTCTCTTGCGAGGGAAAAATT
GCCCATGCGAAGATCATAGGTCTGATTCCTCCTCCACCTGCATTATCACAGAACGATGGA
GATAGCGGGCGAGGAGATAGCGATCCTGACAGCAGCAGCTTCAGTGGAACAAATGAAAGA
GAATTTCCGAAGTCTCTTGAGATTCTTCCCTACGTCACTGCCGATGTTCAAAATCACAAA
TACGACTACGCAGCGCCGTCTAGCGGAAGTAGATGCACCGAGGAATGTTTGCAGTTTGGC
CACAGCGACGTCTGCTGGATGCCATCGCCAACACAAGGTAGCAACAACTGCGCGCCAACC
AATCACATCCAATTCCAAAACGAGTACAATCGAGTACTAGAGACAATCGAAGAGTCATCA
CCACCCGCGGAAGCGAGTACTCCGTACGAGTACGAACCCGACATCATGCGAGAGCACGTC
CGTCGTTCAATTTGTCGAATGGCGTCCGAGTCGCGACGGCACGAACAATCGCCGGAAATG
GCCGCCTACCACTATGACATCACAGAGCGTCATAACAACCCTCGCTGGAGCGACGCCGCG
CGTTTTTCAAACTCTCTTTCTCCCTCGCCAGCGCCATCCAGCGGCATAGGAGCGTCATCG
CAACTTTCGGGGGTTTGTGACGTCAACGGTGTAATACGTCATCAAGTGTATCCACACGTA
GACAACAGTGCAGTTAGTATGCGAGAAACGCAAGAAATTATTAATGACATTGATAAGTTA
CTTGCACACTGA
| SMART |
Cadherin (IPR002126) - T[3-53] 0.074 - T[91-173] 2.7E-19 - T[198-291] 0.024 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[4-55] 5.0E-9 - T[43-178] 2.86E-24 - T[168-287] 2.71E-11 |
| PRINTS |
Cadherin (IPR002126) - T[20-32] 4.1E-20 - T[34-53] 4.1E-20 - T[53-66] 4.1E-20 - T[122-148] 4.1E-20 - T[157-174] 4.1E-20 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[43-53] . - T[163-173] . |
| Pfam |
Cadherin (IPR002126) - T[60-165] 1.9E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 30.854 % | 155 | 3.01E-39 |
| PCD17_HUMAN | 29.834 % | 147 | 1.94E-36 |
| PCD19_HUMAN | 30.343 % | 167 | 3.99E-43 |