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TRANSCRIPT CARD

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  1. Region 'REG00000900' > 
  2. Transcript 'KH2012:KH.C2.503.v1....' > 
  3. Transcript 'KH2012:KH.C1.1024.v1...' > 
  4. Transcript 'Moocci.CG.ELv1_2.S16...' > 
  5. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S1452.g03733.01.t

Possible name(s)

BRIP1; RTEL1; RTEL1-TNFRSF6B

Gene model

Phfumi.CG.MTP2014.S1452.g03733

Location

S1452 [0 / 5,553]

Sequences

Amino acid sequence

Length: 514

>Phfumi.CG.MTP2014.S1452.g03733.01.p
LDRKSRRSHNLEIGGNVIIFDEAHNLEKLCEESASFDLSSLDIANCIEEVGDLLIAVTKM
AETGTVADGHEAGESTALSEFKKDDVALMKSFFLALEEHLDRIELPASKSKSEPGRYIFD
FFGKVNLTFDTHEILLELMDKISSYLSTLSNSYRTRGTALQKFSEIIKVAFSASSSGPAN
SGTPTFSIYSAPSRPSIEDLTRFYRVHICEDAPKSGKKDMWKKDKGTLKTKPMAEVARVS
PGGLLVFFPSYAAMEHYVKAWRESSSVMKKLESTKLCTVEPRGKGELRDAIDKFYSDVKS
PQGGALFAICRGKVSEGLDFANDNGRAVLIIGIPFPPTQDAKVKLKMSFLDDLKRSGVPN
VIPGSEWYRLQACRAVNQAIGRVIRHRYDYGAIILCDQRFTRKDQVNELPKWIQCHVTPF
DDCPKAMRRLKSFFCSVKEKENFRLRSISGKDAAQPKRPQPAKRPDMPVSSSSASGHQVS
FGGMKKMYDITKLPKMSDPDCHVPSRVSKPKYET

Nucleotide sequence

Length: 1,545

>Phfumi.CG.MTP2014.S1452.g03733.01.t
CTTGACCGAAAGTCTAGAAGATCACATAACCTGGAAATTGGAGGAAATGTGATTATATTT
GATGAAGCTCATAACTTGGAAAAACTATGTGAGGAGTCGGCATCATTTGATTTGTCATCA
TTAGACATAGCAAATTGCATTGAAGAAGTAGGAGACCTTTTAATTGCAGTTACAAAGATG
GCGGAGACTGGAACAGTGGCAGATGGGCATGAAGCTGGTGAATCAACGGCACTTTCTGAG
TTCAAAAAGGATGATGTTGCATTGATGAAGTCCTTCTTCCTTGCATTGGAAGAACACCTT
GACAGAATCGAACTTCCAGCATCAAAAAGCAAATCAGAACCAGGGAGGTATATATTCGAC
TTCTTTGGCAAAGTGAACCTGACTTTTGACACACATGAAATTCTACTTGAGCTCATGGAC
AAAATCTCATCATACTTATCCACATTAAGTAACTCTTACCGTACACGCGGCACGGCACTT
CAGAAGTTCTCGGAAATTATCAAGGTGGCTTTCAGTGCGTCATCCTCCGGACCGGCAAAC
AGTGGAACGCCGACGTTCTCCATATATTCGGCTCCTTCCCGACCCTCGATAGAAGATCTG
ACTCGGTTCTACCGCGTTCACATATGCGAGGACGCACCCAAGTCCGGAAAGAAAGACATG
TGGAAAAAGGACAAAGGGACTTTAAAAACAAAACCAATGGCCGAGGTGGCAAGAGTGTCA
CCTGGTGGCCTACTCGTCTTCTTTCCATCCTATGCTGCTATGGAACATTATGTGAAAGCA
TGGCGGGAAAGCTCAAGCGTTATGAAAAAGCTGGAATCAACCAAACTATGCACCGTTGAA
CCTCGTGGTAAGGGCGAGCTTAGAGACGCCATCGACAAATTCTACTCCGATGTTAAATCG
CCGCAAGGTGGAGCTCTCTTTGCTATATGTAGAGGCAAGGTTTCAGAGGGCCTTGACTTT
GCCAACGACAACGGTCGTGCGGTGCTTATCATAGGTATTCCATTTCCACCCACCCAAGAT
GCGAAAGTGAAACTGAAGATGTCGTTCCTCGACGACCTTAAACGCTCCGGTGTGCCCAAC
GTTATTCCTGGTTCCGAGTGGTACCGCCTGCAAGCTTGTCGAGCTGTCAATCAGGCCATT
GGACGTGTAATACGTCATCGCTATGACTACGGGGCGATTATCCTTTGCGATCAGCGCTTC
ACGAGAAAAGATCAAGTAAATGAGCTACCCAAGTGGATCCAGTGTCACGTGACTCCCTTC
GACGACTGCCCGAAAGCGATGCGAAGACTCAAGTCGTTTTTCTGCTCCGTCAAAGAAAAA
GAAAACTTCCGTCTCCGGTCGATCTCAGGAAAAGACGCCGCACAACCCAAACGACCCCAA
CCGGCCAAACGTCCTGACATGCCAGTAAGCAGTAGTAGCGCTTCGGGCCATCAAGTGTCC
TTCGGAGGCATGAAGAAGATGTATGACATCACAAAACTGCCGAAAATGAGCGACCCAGAT
TGCCACGTACCTAGCCGAGTCAGCAAACCCAAGTATGAGACATAA

InterProScan

Pfam
DEAD_2 (IPR010614) - T[1-40] 2.3E-8
Pfam
ATP-dep_Helicase_C (IPR006555) - T[235-414] 5.5E-52
SMART
ATP-dep_Helicase_C (IPR006555) - T[251-402] 7.6E-53

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ERCC2_HUMAN 34.409 % 130 5.47E-32
FANCJ_HUMAN 37.885 % 155 2.39E-40
RTEL1_HUMAN 48.077 % 212 2.14E-59