Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S1452.g03733.01.t

Possible name(s)

BRIP1; RTEL1; RTEL1-TNFRSF6B

Gene model

Phfumi.CG.MTP2014.S1452.g03733

Location

S1452 [0 / 5,553]

Sequences

Amino acid sequence

Length: 514

>Phfumi.CG.MTP2014.S1452.g03733.01.p
LDRKSRRSHNLEIGGNVIIFDEAHNLEKLCEESASFDLSSLDIANCIEEVGDLLIAVTKM
AETGTVADGHEAGESTALSEFKKDDVALMKSFFLALEEHLDRIELPASKSKSEPGRYIFD
FFGKVNLTFDTHEILLELMDKISSYLSTLSNSYRTRGTALQKFSEIIKVAFSASSSGPAN
SGTPTFSIYSAPSRPSIEDLTRFYRVHICEDAPKSGKKDMWKKDKGTLKTKPMAEVARVS
PGGLLVFFPSYAAMEHYVKAWRESSSVMKKLESTKLCTVEPRGKGELRDAIDKFYSDVKS
PQGGALFAICRGKVSEGLDFANDNGRAVLIIGIPFPPTQDAKVKLKMSFLDDLKRSGVPN
VIPGSEWYRLQACRAVNQAIGRVIRHRYDYGAIILCDQRFTRKDQVNELPKWIQCHVTPF
DDCPKAMRRLKSFFCSVKEKENFRLRSISGKDAAQPKRPQPAKRPDMPVSSSSASGHQVS
FGGMKKMYDITKLPKMSDPDCHVPSRVSKPKYET

Nucleotide sequence

Length: 1,545

>Phfumi.CG.MTP2014.S1452.g03733.01.t
CTTGACCGAAAGTCTAGAAGATCACATAACCTGGAAATTGGAGGAAATGTGATTATATTT
GATGAAGCTCATAACTTGGAAAAACTATGTGAGGAGTCGGCATCATTTGATTTGTCATCA
TTAGACATAGCAAATTGCATTGAAGAAGTAGGAGACCTTTTAATTGCAGTTACAAAGATG
GCGGAGACTGGAACAGTGGCAGATGGGCATGAAGCTGGTGAATCAACGGCACTTTCTGAG
TTCAAAAAGGATGATGTTGCATTGATGAAGTCCTTCTTCCTTGCATTGGAAGAACACCTT
GACAGAATCGAACTTCCAGCATCAAAAAGCAAATCAGAACCAGGGAGGTATATATTCGAC
TTCTTTGGCAAAGTGAACCTGACTTTTGACACACATGAAATTCTACTTGAGCTCATGGAC
AAAATCTCATCATACTTATCCACATTAAGTAACTCTTACCGTACACGCGGCACGGCACTT
CAGAAGTTCTCGGAAATTATCAAGGTGGCTTTCAGTGCGTCATCCTCCGGACCGGCAAAC
AGTGGAACGCCGACGTTCTCCATATATTCGGCTCCTTCCCGACCCTCGATAGAAGATCTG
ACTCGGTTCTACCGCGTTCACATATGCGAGGACGCACCCAAGTCCGGAAAGAAAGACATG
TGGAAAAAGGACAAAGGGACTTTAAAAACAAAACCAATGGCCGAGGTGGCAAGAGTGTCA
CCTGGTGGCCTACTCGTCTTCTTTCCATCCTATGCTGCTATGGAACATTATGTGAAAGCA
TGGCGGGAAAGCTCAAGCGTTATGAAAAAGCTGGAATCAACCAAACTATGCACCGTTGAA
CCTCGTGGTAAGGGCGAGCTTAGAGACGCCATCGACAAATTCTACTCCGATGTTAAATCG
CCGCAAGGTGGAGCTCTCTTTGCTATATGTAGAGGCAAGGTTTCAGAGGGCCTTGACTTT
GCCAACGACAACGGTCGTGCGGTGCTTATCATAGGTATTCCATTTCCACCCACCCAAGAT
GCGAAAGTGAAACTGAAGATGTCGTTCCTCGACGACCTTAAACGCTCCGGTGTGCCCAAC
GTTATTCCTGGTTCCGAGTGGTACCGCCTGCAAGCTTGTCGAGCTGTCAATCAGGCCATT
GGACGTGTAATACGTCATCGCTATGACTACGGGGCGATTATCCTTTGCGATCAGCGCTTC
ACGAGAAAAGATCAAGTAAATGAGCTACCCAAGTGGATCCAGTGTCACGTGACTCCCTTC
GACGACTGCCCGAAAGCGATGCGAAGACTCAAGTCGTTTTTCTGCTCCGTCAAAGAAAAA
GAAAACTTCCGTCTCCGGTCGATCTCAGGAAAAGACGCCGCACAACCCAAACGACCCCAA
CCGGCCAAACGTCCTGACATGCCAGTAAGCAGTAGTAGCGCTTCGGGCCATCAAGTGTCC
TTCGGAGGCATGAAGAAGATGTATGACATCACAAAACTGCCGAAAATGAGCGACCCAGAT
TGCCACGTACCTAGCCGAGTCAGCAAACCCAAGTATGAGACATAA

InterProScan

Pfam	DEAD_2 (IPR010614) - T[1-40] 2.3E-8
Pfam	ATP-dep_Helicase_C (IPR006555) - T[235-414] 5.5E-52
SMART	ATP-dep_Helicase_C (IPR006555) - T[251-402] 7.6E-53

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ERCC2_HUMAN	34.409 %	130	5.47E-32
FANCJ_HUMAN	37.885 %	155	2.39E-40
RTEL1_HUMAN	48.077 %	212	2.14E-59