- Clone 'cima874213' >
- Clone 'ciad061k02' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S157.g01223.01.t
Possible name(s)
PCDH10; PCDHB11; PCDHGC5
Gene model
Location
S157 [25,620 / 31,513]
Amino acid sequence
Length: 1,057
>Phfumi.CG.MTP2014.S157.g01223.01.p
VEMTQSWQHIASVTMLMTTWFITSSLASRAFTQRFHLKENSPTGTIVAELADILDTKITP
KKNFQLLSEKLMTYGSKSSGGRKRRWMALDETTGTITLQRELNREDICRDSSPCLIQLQI
FVRTDFRMVNLEVEVLDTNEHAPTFPVKYAIVNVSEEAHIGDVISLDRYLARDRDAGNNS
VVEYSLSPTNYFSLVQSSDETGSPHLQLKVERSLDYERKPLFDLTLNAEDKGESPLSSHV
PLQVRVLDANDNSPRFDSEEYPVVLRENLEPGYVITRVQARDPDSGEAGTVRYSLATRNH
DSVRRLVTVNDVTGEVTLKNELDRESNDKTIIYIEATDLGERVQNVGRTRLVLHVGDVND
NAPVISVSYIAPSDGNTVFVSETSPVPAYFAYVSAKDIDFDINGFVDIEIKNAVTVVPTN
SIPVTTIANQHADALDTFVLNKNGFLGIRKKLDREATERYTITLQACDQGKDRQCSYENL
DVVVMDENDHAPEFSQSEVNVTIAENASVGSVITTITATDGDKGNLPALQLNEDDETVPS
TNGDLTYSLSGSDGSFAIEPRSGRISLVRSIDREQYSQWKILVTATDGGGQKAMCQLNVF
VTDVNDNTPQFTNPFNDDLTIYATVVRDDIITRVQAVDYDQGINGEMRFGLVFVDGVQQT
GHVNTSLFILNSTNGDLRLNMSSPMLRTSLGPHSIVIQVRDGGKPTRKSQRRMTVIITDK
VTLPTMPTVSDKVPLFQSESSFLIIIVALSAALVLLIIVSAAIACKCRKENKKVRTYTCT
KAQEDRRSSVKLIDEKAASLTRATSKESLKGSIAWSHASNKRQHSQTYDSTTDVTNLSRS
DAVMSHQFTSSGASLDNQSNLRQIDSTCIIKSRPLASSSQHEGDSGHGDSDPDVTSGDVS
FEKGFSRQRKPSEISSVEGMYIHNESLGPQCNKQCLELGHSDTCWMPTGTDNSTSNHFLE
MRTPPQSELSEKSGNLEPIPETQPVRSFWAHVTSESTMSSIYSSVSPTVYATPNHETYVD
PRHVMLETRLSVRNASARNNSTTDSITTGYVTEPEII
Nucleotide sequence
Length: 3,174
>Phfumi.CG.MTP2014.S157.g01223.01.t
GTCGAAATGACTCAGAGCTGGCAGCATATCGCCTCGGTGACGATGCTGATGACAACATGG
TTCATTACGTCATCGCTCGCTTCACGGGCGTTCACTCAACGGTTTCATTTGAAGGAAAAT
TCGCCGACCGGTACAATTGTCGCCGAGCTCGCTGACATTTTAGACACGAAGATAACGCCA
AAAAAGAACTTTCAGCTATTGAGCGAGAAGCTGATGACATACGGATCCAAGTCGAGCGGT
GGACGCAAACGCAGGTGGATGGCACTCGATGAAACCACAGGGACAATAACTCTACAGCGC
GAGCTTAACCGCGAGGATATCTGCAGAGACTCGTCGCCTTGTCTTATTCAACTTCAGATA
TTTGTGCGAACTGACTTCCGCATGGTGAACCTTGAAGTGGAAGTGCTGGACACCAACGAG
CATGCCCCAACGTTCCCGGTCAAATACGCGATTGTCAACGTTAGCGAGGAGGCACATATC
GGTGACGTCATTAGCCTGGATCGGTACCTGGCACGTGATCGCGACGCAGGCAACAACTCA
GTCGTCGAGTACTCGCTGAGCCCCACCAATTATTTCAGCCTTGTTCAGTCAAGCGACGAG
ACGGGAAGTCCACATCTGCAGCTCAAAGTCGAACGGTCTCTCGATTACGAACGCAAACCG
CTTTTCGACCTGACATTGAACGCTGAAGACAAGGGCGAATCACCATTGTCAAGTCACGTG
CCTCTGCAAGTACGAGTTCTTGACGCCAACGACAACAGCCCAAGGTTTGACAGCGAGGAA
TACCCAGTAGTGCTTCGAGAGAACCTGGAACCTGGATACGTCATTACCCGCGTTCAGGCA
AGAGATCCAGATTCAGGTGAAGCGGGAACGGTTCGGTATTCCCTTGCCACACGAAACCAC
GACTCTGTGCGGAGACTCGTCACTGTGAATGACGTCACTGGAGAAGTGACGCTCAAGAAC
GAACTGGACAGAGAGTCGAACGACAAAACTATAATCTACATCGAAGCTACGGATTTGGGT
GAAAGAGTACAAAATGTTGGACGAACACGACTTGTACTTCATGTTGGCGATGTGAACGAC
AATGCTCCAGTCATCAGTGTTAGCTACATAGCGCCGTCTGACGGAAATACAGTTTTTGTT
TCCGAAACGTCACCAGTTCCGGCGTACTTCGCTTACGTCAGTGCCAAAGACATCGATTTC
GATATCAACGGTTTTGTGGACATAGAAATCAAAAACGCTGTAACAGTCGTACCAACAAAT
TCGATCCCGGTAACAACTATCGCAAATCAACATGCCGATGCTCTGGACACATTCGTGCTC
AATAAGAACGGATTTCTGGGCATCCGTAAAAAGTTGGACAGGGAGGCTACCGAGAGATAC
ACGATTACATTGCAAGCATGTGATCAAGGAAAAGATCGACAATGCTCATATGAAAACTTG
GATGTCGTTGTAATGGACGAGAACGACCACGCCCCCGAATTCAGCCAATCAGAGGTCAAT
GTGACAATCGCCGAGAATGCGTCAGTAGGAAGTGTAATAACAACCATCACAGCTACAGAC
GGTGACAAAGGAAATCTTCCGGCACTACAACTTAACGAGGACGATGAAACAGTCCCATCC
ACAAACGGGGATCTAACCTACTCGCTTTCGGGCAGTGACGGATCATTCGCGATCGAACCA
AGAAGTGGTCGAATTAGCCTTGTAAGGTCAATTGACAGAGAGCAGTATTCGCAGTGGAAG
ATACTTGTTACTGCTACTGACGGCGGAGGTCAAAAAGCAATGTGCCAGTTGAACGTGTTC
GTGACAGACGTTAACGACAACACACCTCAGTTCACCAATCCTTTCAATGACGACCTGACG
ATATACGCCACTGTGGTACGTGACGACATTATTACCCGTGTGCAGGCTGTGGATTACGAT
CAGGGTATTAACGGCGAGATGAGGTTTGGCTTGGTATTCGTGGACGGCGTTCAACAAACC
GGGCATGTCAACACTTCACTCTTCATTCTCAACTCTACCAATGGCGACTTACGACTGAAT
ATGAGTAGCCCAATGCTACGCACAAGCCTCGGCCCCCACTCCATCGTTATACAGGTGCGC
GACGGTGGAAAGCCGACTAGAAAGAGCCAACGTCGCATGACCGTGATCATCACCGACAAA
GTCACTCTGCCCACAATGCCGACGGTTTCGGATAAAGTCCCGCTGTTTCAATCCGAGTCG
TCGTTCCTGATTATTATCGTGGCTCTCTCCGCTGCACTCGTGCTCCTCATCATTGTTTCG
GCGGCCATCGCGTGCAAATGCAGAAAAGAAAATAAGAAAGTGCGAACTTACACTTGCACC
AAGGCGCAAGAAGACCGACGCAGCTCAGTTAAACTTATCGATGAAAAAGCTGCTTCTCTA
ACCCGTGCGACATCGAAAGAGAGCTTGAAAGGAAGCATTGCGTGGAGCCACGCGTCAAAT
AAAAGACAACACTCCCAAACGTACGACTCGACAACCGATGTGACTAATTTATCGCGCAGT
GATGCAGTTATGTCTCACCAGTTTACGTCTTCTGGAGCGAGCCTTGATAACCAGAGCAAC
TTACGACAGATTGACTCTACCTGCATCATTAAGTCTCGACCTCTTGCGTCATCATCGCAA
CATGAAGGCGACAGCGGACATGGTGACAGTGATCCGGATGTTACCAGTGGTGACGTGTCA
TTTGAAAAAGGTTTCTCGAGACAGAGAAAGCCTTCTGAGATAAGCTCTGTTGAGGGAATG
TACATCCACAACGAAAGTCTTGGACCGCAGTGCAACAAACAATGCCTGGAATTGGGACAC
AGTGACACCTGTTGGATGCCGACGGGCACAGACAACAGCACTTCGAATCACTTCCTGGAA
ATGCGCACACCTCCCCAATCCGAACTTTCAGAGAAGTCGGGAAATCTTGAACCAATTCCC
GAGACGCAACCGGTGCGCTCGTTCTGGGCCCACGTCACTTCGGAATCGACAATGAGTTCC
ATATATTCCAGTGTTTCACCGACAGTGTACGCCACCCCTAATCACGAGACCTACGTTGAC
CCGCGTCACGTGATGCTCGAGACGCGTCTTTCAGTGCGGAACGCGAGCGCACGGAACAAC
TCGACCACAGACAGCATCACGACAGGCTACGTGACAGAGCCTGAAATCATTTAA
| Pfam |
Cadherin_N (IPR013164) - T[34-122] 3.9E-8 |
| SMART |
Cadherin (IPR002126) - T[46-143] 0.11 - T[169-254] 1.2E-19 - T[278-363] 3.1E-17 - T[393-492] 9.0E-10 - T[531-609] 7.1E-21 - T[634-725] 0.023 |
| PRINTS |
Cadherin (IPR002126) - T[85-104] 4.7E-27 - T[256-285] 4.7E-27 - T[459-471] 4.7E-27 - T[473-492] 4.7E-27 - T[492-505] 4.7E-27 - T[561-587] 4.7E-27 - T[593-610] 4.7E-27 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[139-248] 7.14E-17 - T[244-369] 6.42E-25 - T[358-486] 2.28E-12 - T[482-614] 5.32E-26 - T[599-719] 1.7E-13 |
| Pfam |
Cadherin (IPR002126) - T[153-247] 1.8E-9 - T[261-347] 1.2E-12 - T[500-601] 1.5E-11 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[244-254] . - T[353-363] . - T[482-492] . - T[599-609] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDBB_HUMAN | 27.995 % | 275 | 7.75E-79 |
| PCD10_HUMAN | 27.047 % | 301 | 1.08E-86 |
| PCDGM_HUMAN | 29.008 % | 273 | 1.77E-77 |