- Clone 'cilv022j15' >
- Clone 'AHC0AAA160YA15' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S157.g01223.02.t
Possible name(s)
PCDH10; PCDHB11; PCDHGC5
Gene model
Location
S157 [25,626 / 31,513]
Amino acid sequence
Length: 1,055
>Phfumi.CG.MTP2014.S157.g01223.02.p
MTQSWQHIASVTMLMTTWFITSSLASRAFTQRFHLKENSPTGTIVAELADILDTKITPKK
NFQLLSEKLMTYGSKSSGGRKRRWMALDETTGTITLQRELNREDICRDSSPCLIQLQIFV
RTDFRMVNLEVEVLDTNEHAPTFPVKYAIVNVSEEAHIGDVISLDRYLARDRDAGNNSVV
EYSLSPTNYFSLVQSSDETGSPHLQLKVERSLDYERKPLFDLTLNAEDKGESPLSSHVPL
QVRVLDANDNSPRFDSEEYPVVLRENLEPGYVITRVQARDPDSGEAGTVRYSLATRNHDS
VRRLVTVNDVTGEVTLKNELDRESNDKTIIYIEATDLGERVQNVGRTRLVLHVGDVNDNA
PVISVSYIAPSDGNTVFVSETSPVPAYFAYVSAKDIDFDINGFVDIEIKNAVTVVPTNSI
PVTTIANQHADALDTFVLNKNGFLGIRKKLDREATERYTITLQACDQGKDRQCSYENLDV
VVMDENDHAPEFSQSEVNVTIAENASVGSVITTITATDGDKGNLPALQLNEDDETVPSTN
GDLTYSLSGSDGSFAIEPRSGRISLVRSIDREQYSQWKILVTATDGGGQKAMCQLNVFVT
DVNDNTPQFTNPFNDDLTIYATVVRDDIITRVQAVDYDQGINGEMRFGLVFVDGVQQTGH
VNTSLFILNSTNGDLRLNMSSPMLRTSLGPHSIVIQVRDGGKPTRKSQRRMTVIITDKVT
LPTMPTVSDKVPLFQSESSFLIIIVALSAALVLLIIVSAAIACKCRKENKKVRTYTCTKA
QEDRRSSVKLIDEKAASLTRATSKESLKGSIAWSHASNKRQHSQTYDSTTDVTNLSRSDA
VMSHQFTSSGASLDNQSNLRQIDSTCIIKSRPLASSSQHEGDSGHGDSDPDVTSGDVSFE
KGFSRQRKPSEISSVEGMYIHNESLGPQCNKQCLELGHSDTCWMPTGTDNSTSNHFLEMR
TPPQSELSEKSGNLEPIPETQPVRSFWAHVTSESTMSSIYSSVSPTVYATPNHETYVDPR
HVMLETRLSVRNASARNNSTTDSITTGYVTEPEII
Nucleotide sequence
Length: 3,168
>Phfumi.CG.MTP2014.S157.g01223.02.t
ATGACTCAGAGCTGGCAGCATATCGCCTCGGTGACGATGCTGATGACAACATGGTTCATT
ACGTCATCGCTCGCTTCACGGGCGTTCACTCAACGGTTTCATTTGAAGGAAAATTCGCCG
ACCGGTACAATTGTCGCCGAGCTCGCTGACATTTTAGACACGAAGATAACGCCAAAAAAG
AACTTTCAGCTATTGAGCGAGAAGCTGATGACATACGGATCCAAGTCGAGCGGTGGACGC
AAACGCAGGTGGATGGCACTCGATGAAACCACAGGGACAATAACTCTACAGCGCGAGCTT
AACCGCGAGGATATCTGCAGAGACTCGTCGCCTTGTCTTATTCAACTTCAGATATTTGTG
CGAACTGACTTCCGCATGGTGAACCTTGAAGTGGAAGTGCTGGACACCAACGAGCATGCC
CCAACGTTCCCGGTCAAATACGCGATTGTCAACGTTAGCGAGGAGGCACATATCGGTGAC
GTCATTAGCCTGGATCGGTACCTGGCACGTGATCGCGACGCAGGCAACAACTCAGTCGTC
GAGTACTCGCTGAGCCCCACCAATTATTTCAGCCTTGTTCAGTCAAGCGACGAGACGGGA
AGTCCACATCTGCAGCTCAAAGTCGAACGGTCTCTCGATTACGAACGCAAACCGCTTTTC
GACCTGACATTGAACGCTGAAGACAAGGGCGAATCACCATTGTCAAGTCACGTGCCTCTG
CAAGTACGAGTTCTTGACGCCAACGACAACAGCCCAAGGTTTGACAGCGAGGAATACCCA
GTAGTGCTTCGAGAGAACCTGGAACCTGGATACGTCATTACCCGCGTTCAGGCAAGAGAT
CCAGATTCAGGTGAAGCGGGAACGGTTCGGTATTCCCTTGCCACACGAAACCACGACTCT
GTGCGGAGACTCGTCACTGTGAATGACGTCACTGGAGAAGTGACGCTCAAGAACGAACTG
GACAGAGAGTCGAACGACAAAACTATAATCTACATCGAAGCTACGGATTTGGGTGAAAGA
GTACAAAATGTTGGACGAACACGACTTGTACTTCATGTTGGCGATGTGAACGACAATGCT
CCAGTCATCAGTGTTAGCTACATAGCGCCGTCTGACGGAAATACAGTTTTTGTTTCCGAA
ACGTCACCAGTTCCGGCGTACTTCGCTTACGTCAGTGCCAAAGACATCGATTTCGATATC
AACGGTTTTGTGGACATAGAAATCAAAAACGCTGTAACAGTCGTACCAACAAATTCGATC
CCGGTAACAACTATCGCAAATCAACATGCCGATGCTCTGGACACATTCGTGCTCAATAAG
AACGGATTTCTGGGCATCCGTAAAAAGTTGGACAGGGAGGCTACCGAGAGATACACGATT
ACATTGCAAGCATGTGATCAAGGAAAAGATCGACAATGCTCATATGAAAACTTGGATGTC
GTTGTAATGGACGAGAACGACCACGCCCCCGAATTCAGCCAATCAGAGGTCAATGTGACA
ATCGCCGAGAATGCGTCAGTAGGAAGTGTAATAACAACCATCACAGCTACAGACGGTGAC
AAAGGAAATCTTCCGGCACTACAACTTAACGAGGACGATGAAACAGTCCCATCCACAAAC
GGGGATCTAACCTACTCGCTTTCGGGCAGTGACGGATCATTCGCGATCGAACCAAGAAGT
GGTCGAATTAGCCTTGTAAGGTCAATTGACAGAGAGCAGTATTCGCAGTGGAAGATACTT
GTTACTGCTACTGACGGCGGAGGTCAAAAAGCAATGTGCCAGTTGAACGTGTTCGTGACA
GACGTTAACGACAACACACCTCAGTTCACCAATCCTTTCAATGACGACCTGACGATATAC
GCCACTGTGGTACGTGACGACATTATTACCCGTGTGCAGGCTGTGGATTACGATCAGGGT
ATTAACGGCGAGATGAGGTTTGGCTTGGTATTCGTGGACGGCGTTCAACAAACCGGGCAT
GTCAACACTTCACTCTTCATTCTCAACTCTACCAATGGCGACTTACGACTGAATATGAGT
AGCCCAATGCTACGCACAAGCCTCGGCCCCCACTCCATCGTTATACAGGTGCGCGACGGT
GGAAAGCCGACTAGAAAGAGCCAACGTCGCATGACCGTGATCATCACCGACAAAGTCACT
CTGCCCACAATGCCGACGGTTTCGGATAAAGTCCCGCTGTTTCAATCCGAGTCGTCGTTC
CTGATTATTATCGTGGCTCTCTCCGCTGCACTCGTGCTCCTCATCATTGTTTCGGCGGCC
ATCGCGTGCAAATGCAGAAAAGAAAATAAGAAAGTGCGAACTTACACTTGCACCAAGGCG
CAAGAAGACCGACGCAGCTCAGTTAAACTTATCGATGAAAAAGCTGCTTCTCTAACCCGT
GCGACATCGAAAGAGAGCTTGAAAGGAAGCATTGCGTGGAGCCACGCGTCAAATAAAAGA
CAACACTCCCAAACGTACGACTCGACAACCGATGTGACTAATTTATCGCGCAGTGATGCA
GTTATGTCTCACCAGTTTACGTCTTCTGGAGCGAGCCTTGATAACCAGAGCAACTTACGA
CAGATTGACTCTACCTGCATCATTAAGTCTCGACCTCTTGCGTCATCATCGCAACATGAA
GGCGACAGCGGACATGGTGACAGTGATCCGGATGTTACCAGTGGTGACGTGTCATTTGAA
AAAGGTTTCTCGAGACAGAGAAAGCCTTCTGAGATAAGCTCTGTTGAGGGAATGTACATC
CACAACGAAAGTCTTGGACCGCAGTGCAACAAACAATGCCTGGAATTGGGACACAGTGAC
ACCTGTTGGATGCCGACGGGCACAGACAACAGCACTTCGAATCACTTCCTGGAAATGCGC
ACACCTCCCCAATCCGAACTTTCAGAGAAGTCGGGAAATCTTGAACCAATTCCCGAGACG
CAACCGGTGCGCTCGTTCTGGGCCCACGTCACTTCGGAATCGACAATGAGTTCCATATAT
TCCAGTGTTTCACCGACAGTGTACGCCACCCCTAATCACGAGACCTACGTTGACCCGCGT
CACGTGATGCTCGAGACGCGTCTTTCAGTGCGGAACGCGAGCGCACGGAACAACTCGACC
ACAGACAGCATCACGACAGGCTACGTGACAGAGCCTGAAATCATTTAA
| Pfam |
Cadherin_N (IPR013164) - T[32-120] 3.9E-8 |
| SMART |
Cadherin (IPR002126) - T[44-141] 0.11 - T[167-252] 1.2E-19 - T[276-361] 3.1E-17 - T[391-490] 9.0E-10 - T[529-607] 7.1E-21 - T[632-723] 0.023 |
| PRINTS |
Cadherin (IPR002126) - T[83-102] 4.7E-27 - T[254-283] 4.7E-27 - T[457-469] 4.7E-27 - T[471-490] 4.7E-27 - T[490-503] 4.7E-27 - T[559-585] 4.7E-27 - T[591-608] 4.7E-27 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[137-246] 7.14E-17 - T[242-367] 6.42E-25 - T[356-484] 2.28E-12 - T[480-612] 5.32E-26 - T[597-717] 1.7E-13 |
| Pfam |
Cadherin (IPR002126) - T[151-245] 1.8E-9 - T[259-345] 1.2E-12 - T[498-599] 1.5E-11 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[242-252] . - T[351-361] . - T[480-490] . - T[597-607] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDBB_HUMAN | 27.995 % | 275 | 7.95E-79 |
| PCD10_HUMAN | 27.047 % | 301 | 8.87E-87 |
| PCDGM_HUMAN | 29.045 % | 273 | 2.86E-77 |