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TRANSCRIPT CARD

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  1. Clone 'cign029k11' > 
  2. Clone 'cinc030h17' > 
  3. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S1651.g03964.01.t

Possible name(s)

LRP1; LRP1B; RXFP2

Gene model

Phfumi.CG.MTP2014.S1651.g03964

Location

S1651 [13,149 / 17,036]

Sequences

Amino acid sequence

Length: 310

>Phfumi.CG.MTP2014.S1651.g03964.01.p
SKCSTGQVRCENGNFTQCVNRSSVCDGIVDCDNNMDEKCQPVNCSTRNFLEPAVSGVLCD
GVEDCKLISVSSEFIARWLVPPGFPTDECKAQCPESSRKFNCTVDSHGVVSVSQYPFACH
KFIYAMGRRFMVGESKPPELLCNGVVDCPADSGDEINCTERFSCKSGNMISIPRSQLCDG
YEDCDNGTDESRELCPDRFFCSSRQGSKTVIIGESKALKKVFKKERGASLRTNHMLVLNL
AVADFLMSIYLFMLGIAGAVYSGSYCSKSLEWLSSNSCVAMGVLVVLSSETSVLTMLFLT
ITRLYAVSKV

Nucleotide sequence

Length: 930

>Phfumi.CG.MTP2014.S1651.g03964.01.t
TCGAAATGTTCCACTGGGCAAGTTCGGTGTGAAAATGGCAACTTTACTCAATGCGTCAAC
CGGAGTTCCGTATGCGATGGAATAGTGGACTGTGACAACAACATGGATGAAAAGTGTCAA
CCGGTAAACTGCTCCACACGTAATTTTCTCGAGCCGGCGGTTTCCGGCGTTTTGTGCGAT
GGAGTTGAGGACTGCAAGTTAATAAGCGTAAGCTCAGAATTTATAGCGAGGTGGCTTGTT
CCACCTGGATTTCCAACAGATGAGTGCAAGGCTCAATGTCCGGAGAGCTCCAGAAAGTTT
AACTGCACAGTTGATTCTCATGGCGTGGTGTCGGTCTCACAATACCCATTTGCATGTCAC
AAATTTATTTACGCGATGGGTAGACGCTTTATGGTGGGGGAATCAAAGCCTCCAGAACTT
CTGTGCAACGGTGTGGTGGACTGTCCAGCAGATAGCGGTGATGAAATCAACTGTACTGAA
AGATTTTCTTGCAAGAGTGGGAATATGATAAGTATCCCCCGATCTCAGTTATGCGACGGA
TACGAAGACTGCGATAACGGAACGGATGAGAGCAGAGAATTGTGCCCGGACAGATTTTTC
TGTTCTTCCCGACAAGGGTCAAAGACTGTTATCATTGGCGAAAGCAAGGCCTTGAAGAAA
GTTTTCAAAAAGGAGCGAGGCGCTTCACTGCGCACCAATCACATGCTGGTGTTAAATCTA
GCGGTTGCCGACTTTCTCATGTCAATTTACCTCTTCATGTTGGGAATAGCGGGCGCAGTT
TACAGTGGAAGTTATTGCTCGAAATCACTGGAATGGCTGAGCAGCAACTCGTGTGTCGCA
ATGGGAGTACTGGTTGTCCTGTCAAGCGAAACCTCTGTACTGACGATGTTGTTTTTAACA
ATTACTCGACTTTACGCAGTCTCTAAGGTA

InterProScan

SMART
LDrepeatLR_classA_rpt (IPR002172) - T[2-46] 1.1E-5 - T[157-197] 1.2E-6
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[2-40] 11.038 - T[157-196] 10.387
SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[2-41] 2.75E-6 - T[161-190] 2.75E-6
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[3-38] 1.0296E-5 - T[162-190] 9.58835E-4
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[16-37] 2.2E-9 - T[133-154] 2.2E-9 - T[169-190] 2.2E-9
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[158-193] 1.1E-5
ProSiteProfiles
GPCR_Rhodpsn_7TM (IPR017452) - T[213-310] 11.505
PANTHER
TSHR/LHCGR/FSHR (IPR034298) - T[221-307] 3.5E-28

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value