Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 1,037

>Phfumi.CG.MTP2014.S17.g00325.01.p
TMICTECGDEFTLKSELESHMAQHRRDLQKHLSDRTSPFYAVDQVIQQNMELNQESQRKY
RRKANPAKCPFCNKEFRKECQLKRHILIHTGEKPFACTLCDKAFNQKSALQIHMMMHSGK
KPYTCPHCPQNPQSILSMLTEDMISASEAHRGKPVAKEDMDVIQQLLRSLDDGDNSTSDS
LSISNAESLISQEMDSDIVQQALQDSGVDHQRSQDSNDSIITSNVQLVDKNQPLDKQRRS
VISGLYLRSPGFSGDHIWKVRKVDGVRWHQCMFCPKEFKKPSDLVRHIRTHTQERPYKCS
KCHKSFAVKTSLTAHERTHLGFRGYKCQVCLKSFTTSGSLKVHLRMHTGARPFKCTMCDM
SFRTTGHRHNHILSHMRGRAHKRPHKRAKKDLFQMWTAPSNTPLQQPILITESGEEQPKE
TEGEKPYSCTQCGKSFISHSILKAHLTTHTEQLGTEGESASSSDVTMMKDDDTVEFHNDP
TLLQVNPNVIQNINKLPQFSVSHPAQSGEIPQTDTNMGDVIENLEISEDGEITTSTNKSQ
TGPVQCAVSSENLKIFLDKRTCAVCEQVCESESSLRDHVKLHNAKEVNEAKKKIVSKRKR
TGFYLLSNEQSEILEKTDPSQNMTLSERVLLDAVAEKDRVTPLQNNQRGRFKEFETNGPL
HPNVCEFCPKSFRKPSDLARHVRTHTGVKPYGCDACGKTFTTKSTLVSHQKSHLQRKMFR
CHICDMMYAAKSSLKVHMRLHTGAKPYKCPNCSLTFRTSGHRKNHMTVHLVYPNKTKNAN
EQEAKNPDPVPVQPVTTTTTVQSTSAASSQPSVVWPDVTLTVPVDSILGTGLFQQQEGDG
STVPVHLQTHNLQLSTDDPNITLQIDPVLLQQTIQESQRTPIQQQQQMYVLLFASNTPAY
HPSLNWPAPNVVIQPVNNLCLHSLGQSGDSSVPPCDEQVRSSQEINIAVPSSLAGITQQL
LQSPIVVANNSTLMETNKNQELTLNLNNPAVIQQTNDGQQTQHQASYRIQSQDGAVGTQD
LTLTLNSQDLINSQVMK

Nucleotide sequence

Length: 3,111

>Phfumi.CG.MTP2014.S17.g00325.01.t
ACAATGATATGTACTGAATGCGGAGATGAGTTTACTCTAAAATCGGAACTTGAATCACAT
ATGGCACAACACAGAAGAGATTTACAAAAACATTTGAGTGACAGAACTTCACCTTTTTAT
GCTGTTGATCAAGTTATTCAGCAAAACATGGAATTAAATCAAGAAAGCCAACGAAAATAT
CGCCGTAAAGCAAATCCAGCGAAGTGTCCATTCTGCAACAAGGAGTTTCGAAAGGAATGC
CAATTAAAAAGACACATTCTTATTCACACTGGTGAAAAACCATTTGCCTGCACTTTATGC
GACAAAGCATTTAACCAGAAGAGTGCTCTGCAAATCCACATGATGATGCATTCAGGAAAG
AAACCTTATACATGCCCACACTGCCCACAAAACCCGCAAAGTATATTATCAATGCTCACT
GAAGATATGATATCGGCCAGTGAAGCTCATAGGGGAAAACCTGTTGCCAAGGAGGATATG
GACGTCATCCAACAGTTGCTAAGGAGTTTGGATGACGGTGACAACTCCACTTCGGACAGT
CTTTCCATTTCGAATGCTGAAAGTCTGATAAGCCAGGAAATGGACAGTGACATTGTCCAA
CAAGCTTTACAAGATAGTGGGGTCGACCACCAGAGGTCGCAAGACTCAAATGATTCGATT
ATCACCTCAAATGTTCAGCTGGTGGACAAAAATCAACCCCTTGATAAGCAAAGAAGATCA
GTGATCTCTGGTCTGTATCTTCGTAGTCCTGGGTTCTCTGGTGACCACATCTGGAAAGTT
CGGAAGGTTGACGGAGTGAGATGGCACCAGTGCATGTTTTGTCCAAAGGAATTTAAGAAA
CCAAGTGATCTGGTGCGCCACATTCGTACTCACACTCAAGAACGACCTTACAAATGTTCC
AAGTGTCACAAAAGTTTTGCTGTCAAAACATCGCTTACTGCGCATGAGCGAACACACCTT
GGATTTCGAGGTTACAAGTGCCAGGTATGTTTGAAATCATTCACAACATCAGGAAGTTTA
AAAGTCCATCTTCGCATGCACACTGGAGCACGGCCGTTCAAATGTACAATGTGCGACATG
AGTTTTCGGACCACAGGACATCGACACAATCACATCCTGTCGCATATGAGAGGAAGAGCA
CATAAGCGACCACACAAGCGAGCTAAAAAGGATTTGTTTCAAATGTGGACAGCACCCAGC
AACACCCCTCTTCAACAGCCAATCCTAATCACCGAATCTGGGGAAGAACAGCCGAAAGAA
ACAGAAGGAGAAAAACCATATTCATGTACTCAATGTGGAAAGTCATTTATATCGCACAGC
ATTCTCAAAGCGCATCTGACCACCCACACTGAACAACTTGGCACAGAGGGGGAAAGCGCT
TCTAGCAGTGATGTCACAATGATGAAAGATGATGACACAGTCGAGTTTCATAATGACCCC
ACATTGCTTCAGGTCAACCCTAATGTGATACAAAACATCAACAAACTACCTCAATTTTCT
GTAAGTCACCCAGCACAATCAGGGGAGATTCCCCAAACTGACACCAACATGGGTGATGTC
ATTGAGAATTTAGAAATTTCTGAAGATGGAGAAATAACTACTAGCACAAACAAGTCACAA
ACTGGACCTGTGCAATGTGCGGTGAGTTCAGAAAATTTAAAAATATTTTTAGACAAACGA
ACATGTGCAGTTTGTGAACAAGTTTGTGAAAGTGAATCTTCGCTGCGGGATCATGTAAAA
CTTCATAATGCCAAGGAAGTTAACGAGGCTAAAAAGAAAATAGTATCAAAAAGAAAAAGA
ACTGGCTTCTACCTTTTATCGAATGAGCAGAGCGAGATTCTTGAGAAAACTGATCCAAGT
CAAAACATGACTTTATCCGAGCGAGTTTTGCTTGATGCAGTTGCAGAGAAGGACAGGGTC
ACCCCGTTACAAAACAACCAACGCGGACGATTTAAGGAGTTTGAGACCAACGGTCCACTT
CATCCAAACGTTTGTGAATTTTGCCCGAAAAGTTTCAGAAAACCAAGTGACCTTGCCCGC
CATGTTCGAACACACACCGGTGTTAAACCTTATGGGTGTGACGCATGTGGAAAAACATTT
ACGACCAAATCTACACTTGTTTCACATCAAAAATCTCACCTTCAGAGAAAAATGTTTCGA
TGCCATATTTGCGACATGATGTACGCTGCGAAGTCAAGCCTAAAAGTTCACATGCGATTG
CACACTGGGGCGAAACCATACAAATGTCCCAACTGCTCGTTGACATTCCGGACATCTGGT
CATCGTAAAAACCACATGACGGTTCATTTGGTTTATCCGAATAAAACAAAGAATGCCAAT
GAACAAGAGGCGAAAAATCCTGATCCCGTTCCTGTGCAACCTGTCACCACGACAACCACC
GTCCAATCAACAAGCGCCGCGTCATCGCAACCATCAGTTGTATGGCCAGATGTGACGCTC
ACTGTACCGGTTGATAGCATTCTTGGTACGGGTCTCTTTCAGCAACAGGAAGGCGACGGC
TCCACAGTCCCGGTCCACCTTCAGACGCACAACCTTCAACTGTCAACCGATGACCCGAAC
ATCACGCTGCAAATTGATCCAGTGTTGCTACAACAGACCATCCAGGAATCACAACGTACC
CCGATACAACAACAGCAGCAAATGTATGTACTTTTGTTTGCCTCAAATACTCCTGCCTAT
CACCCTTCATTGAACTGGCCTGCTCCGAACGTGGTCATCCAACCGGTCAACAACTTGTGT
TTGCATTCACTCGGTCAATCTGGCGACTCCTCAGTGCCACCTTGCGACGAACAAGTTCGG
TCATCGCAAGAAATCAACATTGCTGTGCCATCGAGTCTGGCTGGAATCACCCAGCAGTTG
TTGCAGAGTCCAATAGTTGTTGCAAATAATTCCACGCTGATGGAAACAAACAAAAACCAG
GAGTTGACATTAAATTTAAACAACCCTGCTGTTATACAGCAGACCAATGACGGCCAACAA
ACTCAACACCAAGCTAGCTACAGAATACAGAGTCAGGATGGTGCAGTTGGAACGCAAGAT
CTTACACTTACTCTCAATTCACAAGATCTTATTAATAGCCAGGTAATGAAG

InterProScan

SMART	Znf_C2H2_type (IPR013087) - T[2-24] 0.14 - T[67-89] 0.0057 - T[95-117] 1.3E-4 - T[269-291] 5.9E-4 - T[297-319] 0.0035 - T[325-347] 2.3E-4 - T[353-375] 0.26 - T[427-449] 0.0041 - T[560-582] 0.26 - T[663-685] 0.003 - T[691-713] 0.0016 - T[719-741] 0.003 - T[747-769] 0.0055
ProSiteProfiles	Znf_C2H2_type (IPR013087) - T[2-29] 10.221 - T[67-94] 14.191 - T[95-122] 15.313 - T[269-296] 14.295 - T[297-324] 13.568 - T[325-352] 15.334 - T[353-380] 9.224 - T[427-454] 12.612 - T[663-690] 14.066 - T[691-718] 13.651 - T[719-746] 13.755 - T[747-769] 9.328
ProSitePatterns	Znf_C2H2_type (IPR013087) - T[4-24] . - T[69-89] . - T[97-117] . - T[271-291] . - T[299-319] . - T[327-347] . - T[355-375] . - T[429-449] . - T[562-582] . - T[665-685] . - T[693-713] . - T[721-741] . - T[749-769] .
SUPERFAMILY	Znf_C2H2_sf (IPR036236) - T[76-129] 1.03E-18 - T[278-334] 9.23E-17 - T[324-375] 1.1E-12 - T[422-451] 2.78E-9 - T[671-726] 1.67E-17 - T[717-769] 1.17E-13
Pfam	Znf_C2H2_type (IPR013087) - T[95-117] 9.3E-5 - T[269-291] 5.5E-5 - T[297-319] 0.0014 - T[325-347] 6.5E-5 - T[664-685] 5.4E-5 - T[693-713] 2.6E-4 - T[719-741] 3.6E-5 - T[747-769] 0.013

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ZN836_HUMAN	25.554 %	196	1.34E-51
ZN729_HUMAN	25.542 %	211	8.15E-56
ZN236_HUMAN	33.445 %	287	2.95E-80

Transcript Model

Transcript Id

Possible name(s)

Gene model

Location

Amino acid sequence

Nucleotide sequence