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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C1.340.v2....' > 
  2. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S19537.g09689.01.t

Possible name(s)

DDX58; DHX58; IFIH1

Gene model

Phfumi.CG.MTP2014.S19537.g09689

Location

S19537 [435 / 2,826]

Sequences

Amino acid sequence

Length: 264

>Phfumi.CG.MTP2014.S19537.g09689.01.p
QDDSRCIIFVKTRSIASGVITYIEGERELMEFRLNPKLLTGAGVSGDKGGMTKREQESTL
EAFRKGKCKVIVATSVAEEGLDIEACNLIITYNYSTNEVGHVQRKGRGRAANSQIVTLAY
DDSGHVQKERENKIRVELTDDMLGTIREIPPETLKEQHRVIVDPEFVRKVVYKTEKNPQK
WKKLVDDNFVTGKMFCANACCRNHLGYRMKHKYLTLSVPKVTSFLFTDQSGGRETFDKWS
QVSFKVKELSDRDLESLLPSEGID

Nucleotide sequence

Length: 792

>Phfumi.CG.MTP2014.S19537.g09689.01.t
CAAGATGACTCTCGCTGCATTATATTTGTAAAAACTCGCAGCATAGCAAGCGGAGTTATC
ACTTATATCGAAGGGGAAAGGGAATTGATGGAATTCAGATTGAATCCAAAGTTACTGACT
GGGGCCGGTGTTAGTGGCGACAAAGGAGGCATGACAAAACGTGAACAGGAAAGTACATTG
GAGGCATTCCGCAAAGGAAAATGCAAAGTAATTGTTGCAACATCTGTGGCTGAGGAAGGT
TTGGATATTGAGGCTTGCAACCTTATTATCACATACAACTATTCAACAAATGAAGTTGGA
CATGTGCAACGAAAAGGTCGTGGCAGAGCAGCTAACAGTCAGATTGTGACGTTGGCTTAC
GATGATAGTGGTCACGTGCAAAAAGAGCGGGAAAACAAGATACGAGTTGAGCTGACGGAT
GATATGTTGGGGACAATCCGGGAAATTCCCCCGGAAACATTGAAGGAGCAGCATCGCGTC
ATTGTGGACCCTGAGTTTGTGAGGAAAGTTGTTTATAAAACTGAAAAAAACCCTCAAAAA
TGGAAGAAGTTGGTCGACGACAATTTTGTCACCGGAAAAATGTTTTGCGCAAACGCGTGC
TGCAGAAACCACTTGGGATATCGGATGAAACACAAATATCTTACGCTGTCGGTTCCCAAG
GTAACGAGCTTCCTGTTCACCGACCAATCAGGAGGAAGAGAGACTTTCGATAAATGGAGC
CAGGTGAGTTTCAAGGTGAAGGAGTTGTCAGATCGGGACCTGGAGAGTTTGTTGCCAAGC
GAAGGAATCGAC

InterProScan

ProSiteProfiles
Helicase_C (IPR001650) - T[1-157] 15.02
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[3-125] 9.67E-20
Pfam
Helicase_C (IPR001650) - T[3-110] 1.8E-17
CDD
Helicase_C (IPR001650) - T[5-113] 2.43187E-15
SMART
Helicase_C (IPR001650) - T[23-111] 1.7E-16
ProSiteProfiles
RLR_CTR (IPR021673) - T[124-256] 18.383
Gene3D
RLR_C_sf (IPR038557) - T[149-260] 1.2E-17
Pfam
RLR_CTR (IPR021673) - T[153-250] 4.2E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DHX58_HUMAN 28.667 % 94 9.47E-22
DDX58_HUMAN 29.268 % 108 8.98E-27
IFIH1_HUMAN 36.842 % 107 2.94E-26