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TRANSCRIPT CARD

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  1. Clone 'cien53599' > 
  2. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S19.g00343.02.t

Possible name(s)

GAPVD1; RABGEF1; RIN2

Gene model

Phfumi.CG.MTP2014.S19.g00343

Location

S19 [33,390 / 36,922]

Sequences

Amino acid sequence

Length: 345

>Phfumi.CG.MTP2014.S19.g00343.02.p
MSDRLISHPVFKQYTNEVEQEGIMDNIEKFLMTRLYRNVFCNDQTDDEIEDLKVQTRIRN
LHWITAAMLDANIDENCPSVTEYTDKAITAIIEMDSKRAPQDKLACITRCSKNIFEAIKH
TKADGSAASADEFLPALIYIILRANPPLLKSNIRYVTRFANPTRVMSGEDAYYFTNLCCA
VSFIENAENGLNASSLSLSQEQFDAYMNGEIPSNTQEVDGPEKKMCPGLRLMYQNLNDLA
SLHERTDRLFAEATEMRQGIERHSERIQSEVNKALIRKIPDLDYPLCSDGSMTDGSSSSS
SYNDHRDMEAFAGPPQLNQHSALDDDITSTEHLPAPLLPTVVSHE

Nucleotide sequence

Length: 1,038

>Phfumi.CG.MTP2014.S19.g00343.02.t
ATGAGTGACCGTCTTATTTCCCATCCTGTGTTTAAACAATACACAAATGAAGTTGAGCAA
GAGGGAATAATGGATAACATCGAAAAGTTTCTTATGACTCGACTGTATCGAAATGTTTTC
TGCAACGATCAAACTGACGATGAAATTGAAGACCTTAAAGTTCAGACTCGCATTAGAAAC
CTTCACTGGATCACAGCAGCAATGCTGGATGCAAATATTGATGAAAACTGTCCAAGCGTC
ACCGAATATACTGACAAGGCCATAACAGCGATTATTGAAATGGATTCAAAAAGAGCTCCT
CAGGACAAACTTGCTTGCATTACACGATGCAGCAAAAATATATTTGAAGCAATAAAGCAC
ACAAAGGCTGATGGTTCAGCTGCAAGTGCTGATGAGTTTTTACCTGCACTCATTTACATA
ATACTGAGGGCAAATCCACCACTGTTGAAGTCGAACATCCGATATGTGACGAGGTTTGCG
AATCCTACGCGTGTCATGTCTGGAGAAGATGCCTATTACTTTACTAACCTGTGCTGTGCC
GTTTCTTTCATTGAAAACGCCGAGAACGGATTGAACGCATCCAGTCTCTCCCTCAGCCAA
GAACAATTCGATGCCTATATGAATGGGGAAATCCCCTCCAACACACAGGAGGTTGATGGT
CCGGAGAAGAAGATGTGCCCTGGTTTAAGACTCATGTACCAGAATCTTAATGACCTTGCT
TCACTTCACGAAAGGACCGACCGTCTGTTCGCGGAGGCGACGGAGATGCGACAAGGAATC
GAGCGACATTCGGAGCGGATACAGTCGGAAGTTAACAAAGCTCTCATCCGCAAAATTCCC
GATCTTGACTACCCGCTGTGCAGCGACGGATCAATGACTGACGGATCCTCTTCGTCTTCG
TCTTACAATGACCACAGGGATATGGAGGCTTTTGCTGGTCCGCCCCAACTCAACCAGCAT
TCCGCGTTAGATGACGATATAACTTCAACCGAACACTTGCCCGCTCCGCTTCTACCAACT
GTGGTCTCGCATGAGTAG

InterProScan

SUPERFAMILY
VPS9_dom_sf (IPR037191) - T[10-208] 2.09E-56
Gene3D
VPS9_dom_sf (IPR037191) - T[44-219] 4.4E-62
ProSiteProfiles
VPS9 (IPR003123) - T[48-193] 36.97
SMART
VPS9 (IPR003123) - T[83-205] 2.4E-20
Pfam
VPS9 (IPR003123) - T[86-188] 1.5E-27

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RABX5_HUMAN 53.462 % 281 3.7E-89