- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Boleac.CG.SB_v3.S114...' >
- Transcript 'KH2012:KH.L96.32.v1....' >
- Transcript 'Moocul.CG.ELv1_2.S24...' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S1.g00020.01.t
Possible name(s)
LHCGR; RXFP2; TSHR
Gene model
Location
S1 [435,530 / 443,559]
Amino acid sequence
Length: 726
>Phfumi.CG.MTP2014.S1.g00020.01.p
MKCNLPQVLLYDSIKDCDDGSDLCYDAVMNISAITGDVQANASFNSSRCFKCLRNSMVVS
SQSVCDGVIDCPDMSDECLCEGKLPEVCVRIQRVVPPRTGRRCTVGQVKCGDGSCIDKTS
VCDGNLDCSDGLDEAESYCGGTKPCMNATAGETCRCSLLAKQTCKQTVATYCDNHMECVV
FSRGSTFDKPAEDECTGRCHLDKIANGTHNASDSDCEPPSRRTRPFTCRGRGRRTLVSVQ
KTINASQVCDGFYDCGKPFSDEARCRGRFLCETASGALSIANREICDFVINCDDQSDEIN
CHDNRFYCENQQPLFVRKQKMFNGVPDCTDWSDECPTVKNETEVTSFSSRYELIGSPVLR
VLVWIMGLLAVVGNSTNNVLVLNLAIADFLMGMYLLILGAVGVIYSGRYCSLDLYWRTSS
RCTALGILVVLSSEASVMTMVLLTSFRLYAVLNPFTAMSRPKIKVVVLLVLLTWAFSFVL
AMIPITESFQATFTDGALLENNPFFHRAVVKFDTFRRFVTRLASFYPRMNSTTSGVAEIS
LKHLGELTSWYQLKKVLDQANLTLPNLNMGRYFGYYSDHSVCIPRIFVTQKDNTWAFSLG
VLCFNLIAFLYVAFAYIFIYGRSKKAGKVATENRGVKSSKRSQEMQKKIFRLIVTDFCCW
VPVSIMAFINFSGIKVPPDAYAYSAILLLPINSALNPIVYSNVWSIVYKKIKKNKVRPTT
SSSKNS
Nucleotide sequence
Length: 2,178
>Phfumi.CG.MTP2014.S1.g00020.01.t
ATGAAATGCAATTTGCCACAGGTTCTGCTTTACGACAGCATAAAAGACTGCGACGACGGA
TCTGATTTGTGCTATGACGCGGTGATGAATATATCTGCAATAACAGGTGACGTCCAAGCC
AACGCCAGTTTCAATTCGAGTCGCTGCTTCAAATGCTTGCGCAATTCCATGGTGGTGTCG
TCACAGAGCGTTTGCGACGGCGTGATCGACTGTCCGGACATGAGTGACGAGTGTCTCTGC
GAAGGGAAACTCCCCGAAGTGTGTGTTAGAATTCAACGGGTTGTACCACCGAGGACTGGA
AGGAGATGTACAGTAGGTCAAGTGAAGTGTGGTGATGGAAGCTGCATTGATAAAACATCG
GTGTGCGACGGAAATCTGGACTGTAGCGACGGTTTGGACGAAGCAGAAAGTTATTGTGGA
GGAACAAAGCCCTGCATGAATGCCACTGCAGGGGAAACCTGTCGTTGTTCGTTATTGGCG
AAGCAGACGTGCAAGCAGACCGTTGCAACCTATTGCGACAACCATATGGAGTGCGTGGTG
TTTTCACGAGGATCGACCTTCGACAAACCAGCGGAAGACGAATGCACGGGAAGATGCCAC
TTGGACAAAATCGCCAACGGGACTCACAACGCTTCCGACAGCGACTGTGAACCCCCTTCG
CGGAGAACGAGACCGTTCACTTGTAGGGGACGAGGGAGAAGGACTTTGGTTTCTGTACAG
AAAACCATCAACGCGTCCCAAGTGTGCGACGGGTTTTACGACTGCGGAAAGCCGTTCTCC
GACGAGGCAAGATGCCGGGGAAGATTTTTATGTGAAACTGCTAGTGGAGCTCTTTCAATC
GCCAACAGAGAGATATGTGATTTTGTTATTAACTGTGACGATCAGAGTGATGAAATCAAC
TGTCACGACAATAGATTTTATTGCGAAAACCAACAGCCATTGTTTGTACGAAAGCAGAAG
ATGTTCAACGGAGTGCCCGACTGTACGGACTGGAGCGACGAATGCCCTACGGTAAAAAAT
GAAACTGAAGTCACTTCGTTTTCGTCACGTTATGAGCTGATCGGAAGTCCAGTGCTACGT
GTACTTGTCTGGATTATGGGACTTTTGGCTGTGGTGGGAAATTCGACCAACAACGTACTC
GTATTGAACCTTGCCATTGCGGACTTTCTCATGGGAATGTACCTGCTGATTCTCGGGGCT
GTCGGAGTCATCTACTCGGGCAGATACTGCTCACTCGACCTGTACTGGCGAACCAGCAGT
CGGTGTACGGCTCTCGGGATCCTTGTCGTTTTATCCAGTGAGGCGTCAGTGATGACGATG
GTACTGCTGACGTCATTTCGCCTGTACGCTGTATTGAACCCGTTCACCGCCATGTCGAGA
CCGAAGATAAAAGTTGTCGTGCTCCTGGTTCTGCTTACATGGGCATTCAGCTTCGTCCTC
GCAATGATTCCTATCACCGAAAGCTTCCAAGCTACGTTTACTGACGGGGCTCTGCTTGAG
AACAACCCCTTCTTTCATCGAGCGGTGGTTAAGTTTGACACTTTTCGAAGATTCGTCACG
CGTTTGGCTTCCTTCTATCCCAGAATGAACTCTACAACTTCAGGGGTCGCTGAAATATCA
CTTAAGCACCTCGGAGAATTGACATCGTGGTATCAGTTGAAGAAGGTTCTGGATCAAGCC
AATCTCACTCTTCCCAACTTGAACATGGGTCGATATTTCGGGTACTACAGTGATCACAGT
GTATGCATTCCAAGGATTTTCGTCACACAGAAGGACAACACCTGGGCCTTCTCCCTCGGG
GTTCTATGCTTCAACCTGATCGCCTTTCTCTATGTTGCGTTCGCTTACATATTCATTTAC
GGTCGCTCGAAAAAGGCTGGAAAGGTTGCCACTGAGAATAGAGGCGTGAAGTCATCGAAA
AGAAGTCAAGAAATGCAAAAGAAGATCTTTCGACTGATCGTCACCGACTTTTGTTGCTGG
GTTCCTGTTTCGATCATGGCCTTCATCAACTTCAGCGGAATTAAGGTTCCTCCTGATGCC
TACGCCTACTCTGCCATCCTATTGCTTCCTATTAACAGCGCCCTAAACCCCATCGTGTAT
TCGAATGTGTGGAGCATCGTGTACAAGAAAATAAAGAAAAATAAAGTGAGGCCCACGACG
AGTTCTTCGAAAAACAGT
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[2-23] 4.9E-19 - T[56-77] 4.9E-19 - T[113-134] 4.9E-19 - T[240-261] 4.9E-19 - T[277-298] 4.9E-19 - T[313-334] 4.9E-19 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[45-82] 0.01 - T[102-141] 1.1E-9 - T[264-303] 0.0081 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[48-80] 2.36E-5 - T[101-138] 2.88E-9 - T[300-339] 3.53E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[50-80] 0.00150413 - T[103-135] 2.46742E-8 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[64-720] 2.5E-90 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[102-140] 11.9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[102-135] 5.7E-7 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[355-700] 22.578 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[374-487] 9.0E-12 - T[588-700] 1.3E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LSHR_HUMAN | 30.573 % | 87.4 | 8.43E-18 |