- Clone 'cign081j24' >
- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S21840.g09790.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S21840 [1 / 2,389]
Amino acid sequence
Length: 408
>Phfumi.CG.MTP2014.S21840.g09790.01.p
FSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPIRIMWSQRD
PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCSDGVSKGYGFVHFETEEA
ALRAIDKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKLDDEQLKEM
FGKYGCVKSVAVMKDSNGNSRGFGFVAFEKHDEAQNAVEGLNGMEIENSNELLYVGRAQK
KQERQNELRSQFEQQKQDRIQRFQGVNLYVKNLDDNINEEDLREAFNQYGTITSAKIMYE
CDVSRGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRREDRKAHLTAQYMQRMTS
TMGVRMPNQLMSQSFQTAGAPGYFMPFQGAQRTYMQSHLIRATPRWQT
Nucleotide sequence
Length: 1,224
>Phfumi.CG.MTP2014.S21840.g09790.01.t
TTTTCTCAAGCTGGACCTGTCCTTTCCATCCGTGTTTGTCGGGATGTCATCACTCGTCGA
TCACTTGGCTATGCCTACGTTAACTTCCAGCAACCAGCTGATGCTGAGCGAGCTTTGGAC
ACCATGAACTATGATCCAATCAAGGGACGTCCAATCAGGATTATGTGGAGCCAACGTGAC
CCATCCCTCCGCAAATCTGGTGTTGGCAATATCTTTATCAAGAACTTGGATAAGTCCATT
GACAACAAGGCCCTGTATGATACCTTTTCTGCCTTCGGAAACATTCTCTCTTGCAAGGTG
TCATGCAGCGATGGTGTATCCAAAGGTTATGGTTTTGTTCATTTTGAAACTGAGGAGGCT
GCACTTCGTGCTATTGATAAGGTCAATGGCATGTTGCTGAATGACAAAAAAGTATTTGTC
GGGAAGTTTCTCACTCGCTCTGAGCGCATCAAGAAAATGGGTGAAAGAGTTCGCCAGTTC
ACAAATGTCTACATTAAAAACTTTGGTGACAAGCTGGATGATGAACAGCTCAAGGAAATG
TTTGGGAAATATGGCTGCGTCAAAAGTGTTGCTGTTATGAAAGATAGCAATGGTAACTCT
CGTGGTTTTGGTTTCGTTGCCTTTGAGAAACATGACGAGGCACAAAACGCCGTAGAAGGT
CTCAATGGAATGGAAATAGAGAACTCAAATGAGCTTCTATATGTTGGCCGTGCTCAGAAG
AAACAAGAACGCCAAAATGAGCTTAGAAGCCAGTTTGAGCAACAAAAGCAAGATCGCATT
CAGAGGTTTCAAGGTGTCAACCTGTATGTGAAAAATTTGGATGACAACATCAATGAGGAG
GATCTCCGTGAGGCTTTTAACCAATATGGAACCATCACAAGTGCCAAGATCATGTACGAA
TGTGATGTATCCCGTGGATTCGGTTTTGTGTGCTTCAGTTCACCTGAGGAGGCCACAAAA
GCTGTCACTGAGATGAATGGTCGCATTGTTGGCTCCAAACCACTGTACGTGGCATTGGCA
CAGCGACGAGAAGATCGCAAAGCCCACCTAACTGCCCAATACATGCAGAGAATGACCAGC
ACTATGGGTGTGAGAATGCCAAACCAGTTGATGAGTCAATCGTTCCAAACAGCTGGCGCG
CCAGGCTACTTCATGCCTTTCCAAGGTGCCCAAAGAACTTACATGCAAAGTCATCTAATC
CGGGCTACACCAAGATGGCAGACA
| SMART |
RRM_dom (IPR000504) - T[1-55] 0.023 - T[70-141] 9.0E-22 - T[162-236] 1.3E-20 - T[267-338] 5.5E-25 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[1-381] 1.1E-181 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-59] 13.652 - T[69-145] 16.159 - T[161-240] 19.28 - T[266-342] 19.297 |
| Pfam |
RRM_dom (IPR000504) - T[1-53] 1.1E-12 - T[71-137] 4.7E-19 - T[163-229] 3.6E-20 - T[268-335] 1.3E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[1-146] 5.98E-40 - T[160-345] 2.5E-47 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-62] 5.6E-17 - T[63-153] 9.3E-22 - T[160-236] 2.2E-22 - T[237-354] 4.3E-29 |
| SMART |
RRM_dom_euk (IPR003954) - T[70-141] 6.0 - T[162-234] 4.9 - T[267-338] 1.6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 68.932 % | 589 | 0 |
| PABP4_HUMAN | 68.841 % | 583 | 0 |
| PABP3_HUMAN | 64.407 % | 545 | 0 |