- Transcript 'Haaura.CG.MTP2014.S2...' >
- EST 'AHC0AAA224YL04_RM1' >
- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S2308.g04717.01.t
Possible name(s)
LRFN4; LRFN5; LRRC4B
Gene model
Location
S2308 [6,553 / 9,784]
Amino acid sequence
Length: 660
>Phfumi.CG.MTP2014.S2308.g04717.01.p
MLESFQAPYGVQLTNLQFLDLSNNALTNLDVAKKTLPQVVSLNLQNNQLRSTVPLELLTA
LKKVDVSGNVLGDNFNLSMLTFLHTITARKVNAVYKFNADTPCSNCPMLPKHAGNVDLQN
NALLQVPTCTGLLAGLSNLTRLQLDCNQISMLSEKTFSGDCFSALSSLYLSHNRLLQIES
SVITHLPNIHTLDVSYNYLQHIDPNILQAFQRIASNDSATLVNKVPTILLNNNSWSCDCF
LTSLQNWVLQTPHAKGKFVCQQPSQLYSKLLGDVSSSDLVCHNASILQPHNVTAVEFESG
TLVCSTTGLPKPIVHWITPKNETISLTSIAQSSNQQDSYFLSEFGEVLTVQHVRLFKTGI
YRYICEHIERKRQYKKALQAQKEEEKINPPIKLRSKSLDESMASLNANRHYSRYDFTCQQ
MFLDTVVKGAHSVKKTLYDARHSEFSVNMWGYAANLRDRLHIEMPSGVQLPSISMPSISM
PSISMPTMPNIPTMQDINTNIERLGSSVMHRSHTLATSVGSVFTLRRWMWQTQNNSSDNE
SRDSDDNLLGDTGVTQVRVDVHPRQQRAYFSGSEPSVPNTEQPHCSKDEQAGPSFKIYRP
TLQRSKSFTKNVQFESDNRMKQQQSVISPLTSAIISDHPNLNTISATVDAVPWHSYETSV
Nucleotide sequence
Length: 1,983
>Phfumi.CG.MTP2014.S2308.g04717.01.t
ATGTTGGAATCCTTTCAAGCACCTTATGGAGTACAACTAACCAATCTTCAATTTCTTGAT
CTGTCCAACAATGCACTTACAAATCTTGATGTAGCAAAGAAAACATTGCCTCAGGTTGTG
TCTTTAAATCTGCAAAACAATCAGCTCAGATCCACTGTACCGTTGGAATTACTAACTGCT
CTGAAAAAAGTTGATGTTTCTGGAAATGTATTAGGTGACAATTTTAACTTATCGATGTTG
ACATTCTTACACACAATTACAGCCAGGAAAGTAAATGCAGTGTATAAGTTTAATGCTGAC
ACCCCTTGCAGCAATTGTCCTATGCTGCCAAAGCATGCAGGAAATGTTGATCTTCAAAAT
AATGCCTTGCTCCAAGTTCCAACATGCACAGGCCTGCTGGCAGGCTTGTCCAACCTCACC
CGCTTGCAGCTGGACTGCAACCAAATATCAATGCTGTCTGAAAAAACCTTTTCTGGTGAC
TGCTTTTCAGCTTTAAGTTCCTTATATTTATCACACAACAGACTTTTGCAAATTGAAAGT
TCAGTAATCACACACTTGCCCAATATTCATACATTGGATGTGTCATACAATTATCTGCAG
CATATTGACCCGAACATCTTACAGGCTTTCCAAAGAATTGCAAGTAATGACTCTGCTACA
CTTGTCAACAAAGTTCCCACCATATTGCTCAACAACAATTCATGGTCATGTGACTGTTTT
CTTACCTCATTGCAGAACTGGGTTTTGCAGACACCTCATGCAAAAGGAAAGTTTGTGTGT
CAGCAACCTAGCCAACTCTATTCAAAGCTTTTAGGAGATGTTTCTTCATCTGATTTAGTT
TGCCATAATGCCTCAATATTACAGCCACACAATGTTACAGCTGTTGAATTTGAAAGTGGA
ACTTTGGTATGTTCTACAACTGGATTGCCGAAGCCCATTGTTCACTGGATCACACCGAAG
AATGAAACTATTTCTTTGACCAGCATTGCACAAAGTAGTAATCAACAAGATTCCTATTTC
CTTTCAGAATTTGGGGAGGTGCTCACTGTACAACATGTTCGATTGTTTAAAACTGGGATC
TACAGGTATATATGTGAACACATTGAGAGAAAAAGACAGTACAAAAAAGCTCTGCAAGCC
CAAAAAGAAGAAGAAAAGATAAATCCACCCATAAAACTTCGATCCAAATCTCTTGATGAA
TCTATGGCTTCACTAAATGCAAACAGGCATTACAGCAGATATGATTTCACATGCCAGCAA
ATGTTTTTGGATACTGTTGTAAAAGGTGCACACTCTGTCAAAAAGACTCTGTATGATGCA
AGGCATTCTGAATTCTCAGTTAATATGTGGGGATATGCTGCCAACCTCAGGGACCGTCTT
CACATTGAAATGCCGAGTGGTGTACAGCTTCCAAGTATTTCGATGCCAAGCATTTCAATG
CCGAGTATCTCTATGCCGACCATGCCCAACATACCTACGATGCAGGACATCAACACAAAC
ATAGAAAGGCTGGGCTCAAGTGTCATGCATAGAAGTCACACTTTGGCCACATCGGTTGGG
TCTGTCTTTACTCTCAGGCGATGGATGTGGCAAACACAAAACAACTCTAGCGACAATGAG
AGCAGGGATTCTGATGATAACCTTCTTGGTGATACTGGTGTCACACAAGTAAGAGTGGAT
GTCCACCCAAGACAACAGCGAGCTTATTTTAGTGGATCAGAACCATCGGTTCCAAATACG
GAACAACCTCATTGTAGCAAAGATGAACAGGCTGGTCCAAGTTTTAAAATCTACCGACCA
ACTTTGCAAAGATCAAAATCCTTCACAAAAAATGTCCAGTTTGAATCTGATAACAGAATG
AAACAGCAACAATCAGTAATTTCGCCATTGACAAGTGCAATCATCAGTGACCATCCAAAC
TTAAACACCATCAGCGCAACTGTTGATGCAGTACCTTGGCATTCATACGAAACCTCTGTT
TAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[2-100] 6.6E-11 - T[101-286] 2.4E-27 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[13-34] 9.2 - T[36-60] 26.0 - T[136-159] 0.0041 - T[162-185] 13.0 - T[186-209] 1.4 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[15-36] 7.504 - T[38-59] 6.695 - T[60-81] 5.125 - T[138-159] 6.611 - T[164-185] 6.588 - T[188-209] 6.272 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[164-208] 2.0E-8 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[233-282] 3.3E-4 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[286-362] 4.9E-7 |
| Gene3D |
Ig-like_fold (IPR013783) - T[287-379] 8.5E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|