- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S2308.g04717.02.t
Possible name(s)
LRFN4; LRFN5; LRRC4B
Gene model
Location
S2308 [6,553 / 10,186]
Amino acid sequence
Length: 843
>Phfumi.CG.MTP2014.S2308.g04717.02.p
MAYFVTLLWIVLYLQCASTDAFRCHEFCSCEQLFPSSQHKVVCHGANDQPTTNMSLFNIS
KNPNCTDILQIESLNFSFPIKHLEISCLQISSPQKLARFTSLISLTITKTNLTSFSLKNI
ESSIQIQKLNLSSNMLESFQAPYGVQLTNLQFLDLSNNALTNLDVAKKTLPQVVSLNLQN
NQLRSTVPLELLTALKKVDVSGNVLGDNFNLSMLTFLHTITARKVNAVYKFNADTPCSNC
PMLPKHAGNVDLQNNALLQVPTCTGLLAGLSNLTRLQLDCNQISMLSEKTFSGDCFSALS
SLYLSHNRLLQIESSVITHLPNIHTLDVSYNYLQHIDPNILQAFQRIASNDSATLVNKVP
TILLNNNSWSCDCFLTSLQNWVLQTPHAKGKFVCQQPSQLYSKLLGDVSSSDLVCHNASI
LQPHNVTAVEFESGTLVCSTTGLPKPIVHWITPKNETISLTSIAQSSNQQDSYFLSEFGE
VLTVQHVRLFKTGIYRCVADNNISTIHSTVALSVLLGQTSTIILLSVACVAFMIAVVVNS
INMCMYICEHIERKRQYKKALQAQKEEEKINPPIKLRSKSLDESMASLNANRHYSRYDFT
CQQMFLDTVVKGAHSVKKTLYDARHSEFSVNMWGYAANLRDRLHIEMPSGVQLPSISMPS
ISMPSISMPTMPNIPTMQDINTNIERLGSSVMHRSHTLATSVGSVFTLRRWMWQTQNNSS
DNESRDSDDNLLGDTGVTQVRVDVHPRQQRAYFSGSEPSVPNTEQPHCSKDEQAGPSFKI
YRPTLQRSKSFTKNVQFESDNRMKQQQSVISPLTSAIISDHPNLNTISATVDAVPWHSYE
TSV
Nucleotide sequence
Length: 2,532
>Phfumi.CG.MTP2014.S2308.g04717.02.t
ATGGCATATTTTGTTACTTTGCTCTGGATAGTTCTGTATCTGCAATGTGCAAGCACTGAT
GCATTCAGGTGCCATGAATTTTGCAGTTGTGAGCAACTTTTTCCATCTTCACAACATAAG
GTGGTCTGCCATGGTGCAAACGATCAACCAACAACAAACATGTCTTTGTTTAACATTAGT
AAAAATCCAAACTGTACCGATATACTACAGATCGAATCACTGAACTTCAGTTTTCCCATC
AAACACCTTGAAATTTCTTGCTTGCAGATTTCATCTCCACAGAAGCTAGCCAGGTTTACA
AGCCTAATTTCTCTTACAATAACAAAGACCAACTTAACTTCGTTTTCTTTAAAGAATATT
GAATCTAGCATACAAATTCAAAAGCTTAATCTGTCTTCTAACATGTTGGAATCCTTTCAA
GCACCTTATGGAGTACAACTAACCAATCTTCAATTTCTTGATCTGTCCAACAATGCACTT
ACAAATCTTGATGTAGCAAAGAAAACATTGCCTCAGGTTGTGTCTTTAAATCTGCAAAAC
AATCAGCTCAGATCCACTGTACCGTTGGAATTACTAACTGCTCTGAAAAAAGTTGATGTT
TCTGGAAATGTATTAGGTGACAATTTTAACTTATCGATGTTGACATTCTTACACACAATT
ACAGCCAGGAAAGTAAATGCAGTGTATAAGTTTAATGCTGACACCCCTTGCAGCAATTGT
CCTATGCTGCCAAAGCATGCAGGAAATGTTGATCTTCAAAATAATGCCTTGCTCCAAGTT
CCAACATGCACAGGCCTGCTGGCAGGCTTGTCCAACCTCACCCGCTTGCAGCTGGACTGC
AACCAAATATCAATGCTGTCTGAAAAAACCTTTTCTGGTGACTGCTTTTCAGCTTTAAGT
TCCTTATATTTATCACACAACAGACTTTTGCAAATTGAAAGTTCAGTAATCACACACTTG
CCCAATATTCATACATTGGATGTGTCATACAATTATCTGCAGCATATTGACCCGAACATC
TTACAGGCTTTCCAAAGAATTGCAAGTAATGACTCTGCTACACTTGTCAACAAAGTTCCC
ACCATATTGCTCAACAACAATTCATGGTCATGTGACTGTTTTCTTACCTCATTGCAGAAC
TGGGTTTTGCAGACACCTCATGCAAAAGGAAAGTTTGTGTGTCAGCAACCTAGCCAACTC
TATTCAAAGCTTTTAGGAGATGTTTCTTCATCTGATTTAGTTTGCCATAATGCCTCAATA
TTACAGCCACACAATGTTACAGCTGTTGAATTTGAAAGTGGAACTTTGGTATGTTCTACA
ACTGGATTGCCGAAGCCCATTGTTCACTGGATCACACCGAAGAATGAAACTATTTCTTTG
ACCAGCATTGCACAAAGTAGTAATCAACAAGATTCCTATTTCCTTTCAGAATTTGGGGAG
GTGCTCACTGTACAACATGTTCGATTGTTTAAAACTGGGATCTACAGATGTGTTGCTGAC
AACAACATCAGCACAATCCACTCAACAGTGGCCTTGAGTGTCCTGCTTGGTCAAACAAGT
ACAATCATTTTGCTGTCAGTGGCTTGTGTAGCTTTCATGATAGCAGTGGTGGTCAATTCC
ATCAATATGTGCATGTATATATGTGAACACATTGAGAGAAAAAGACAGTACAAAAAAGCT
CTGCAAGCCCAAAAAGAAGAAGAAAAGATAAATCCACCCATAAAACTTCGATCCAAATCT
CTTGATGAATCTATGGCTTCACTAAATGCAAACAGGCATTACAGCAGATATGATTTCACA
TGCCAGCAAATGTTTTTGGATACTGTTGTAAAAGGTGCACACTCTGTCAAAAAGACTCTG
TATGATGCAAGGCATTCTGAATTCTCAGTTAATATGTGGGGATATGCTGCCAACCTCAGG
GACCGTCTTCACATTGAAATGCCGAGTGGTGTACAGCTTCCAAGTATTTCGATGCCAAGC
ATTTCAATGCCGAGTATCTCTATGCCGACCATGCCCAACATACCTACGATGCAGGACATC
AACACAAACATAGAAAGGCTGGGCTCAAGTGTCATGCATAGAAGTCACACTTTGGCCACA
TCGGTTGGGTCTGTCTTTACTCTCAGGCGATGGATGTGGCAAACACAAAACAACTCTAGC
GACAATGAGAGCAGGGATTCTGATGATAACCTTCTTGGTGATACTGGTGTCACACAAGTA
AGAGTGGATGTCCACCCAAGACAACAGCGAGCTTATTTTAGTGGATCAGAACCATCGGTT
CCAAATACGGAACAACCTCATTGTAGCAAAGATGAACAGGCTGGTCCAAGTTTTAAAATC
TACCGACCAACTTTGCAAAGATCAAAATCCTTCACAAAAAATGTCCAGTTTGAATCTGAT
AACAGAATGAAACAGCAACAATCAGTAATTTCGCCATTGACAAGTGCAATCATCAGTGAC
CATCCAAACTTAAACACCATCAGCGCAACTGTTGATGCAGTACCTTGGCATTCATACGAA
ACCTCTGTTTAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[35-228] 1.9E-19 - T[233-417] 4.5E-27 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[125-146] 5.463 - T[149-170] 7.504 - T[172-193] 6.695 - T[194-215] 5.125 - T[272-293] 6.611 - T[298-319] 6.588 - T[322-343] 6.272 |
| Pfam |
Leu-rich_rpt_4 (IPR025875) - T[126-164] 2.0E-6 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[147-168] 9.2 - T[170-194] 26.0 - T[270-293] 0.0041 - T[296-319] 13.0 - T[320-343] 1.4 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[298-342] 2.7E-8 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[367-416] 3.3E-4 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[397-513] 9.755 |
| Gene3D |
Ig-like_fold (IPR013783) - T[418-520] 5.8E-13 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[421-515] 1.55E-12 |
| SMART |
Ig_sub (IPR003599) - T[423-515] 1.5E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|