Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S2341.g04742.02.t

Possible name(s)

PAX3; PAX6; PAX7

Gene model

Phfumi.CG.MTP2014.S2341.g04742

Location

S2341 [4,635 / 5,620]

Sequences

Amino acid sequence

Length: 189

>Phfumi.CG.MTP2014.S2341.g04742.02.p
FFTGQGRVNQLGGMFINGRPLPNHIRHKIVEMAAHGVRPCVISRQLRVSHGCVSKILCRY
QETGSIKPGAIGGSKPKVASLDVENKIEEYKNENPGIFSWEIRERLIKDGICERNTVPSV
SSISRTLRAKGCDVDTEAELSGDCEDKRASCFLITHPSTMLCVEAMLICQVVWAAQSKHT
RCPCTPKDD

Nucleotide sequence

Length: 620

>Phfumi.CG.MTP2014.S2341.g04742.02.t
TTTTTTACAGGCCAGGGCCGGGTGAACCAGCTGGGAGGAATGTTTATTAACGGTCGACCC
CTTCCCAATCATATACGACACAAGATCGTGGAAATGGCCGCACACGGAGTACGACCTTGC
GTCATCAGCCGTCAGCTGAGAGTTTCACACGGATGCGTGAGCAAGATACTTTGCAGGTAC
CAGGAGACCGGTTCGATTAAACCGGGGGCGATTGGTGGAAGCAAACCAAAGGTGGCCTCC
CTAGATGTCGAGAACAAGATTGAGGAATACAAGAACGAGAACCCTGGTATCTTCAGCTGG
GAAATTCGGGAGCGCCTCATTAAGGACGGAATATGCGAACGCAACACCGTGCCTTCAGTC
AGCTCAATCAGTCGGACACTGCGCGCCAAGGGATGCGACGTGGATACCGAGGCCGAGTTA
TCAGGTGACTGTGAGGACAAACGCGCTTCGTGTTTTCTAATTACCCACCCATCAACGATG
CTCTGCGTTGAAGCTATGTTAATTTGCCAAGTGGTGTGGGCGGCGCAAAGCAAGCATACG
CGCTGCCCTTGCACACCGAAAGATGATTAAGCCTTGCTGGATCTATCCTCTGGTCCGCGC
TCTCTACCTTTAATAATTAA

InterProScan

ProSiteProfiles	Paired_dom (IPR001523) - T[4-130] 59.338
Pfam	Paired_dom (IPR001523) - T[4-128] 3.0E-72
Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[4-72] 4.7E-39 - T[73-131] 4.7E-31
SMART	Paired_dom (IPR001523) - T[4-128] 3.1E-86
CDD	Paired_dom (IPR001523) - T[4-131] 8.22804E-82
SUPERFAMILY	Homeobox-like_sf (IPR009057) - T[6-131] 3.59E-40
PRINTS	Paired_dom (IPR001523) - T[8-23] 2.3E-38 - T[26-44] 2.3E-38 - T[46-63] 2.3E-38 - T[64-81] 2.3E-38
ProSitePatterns	Paired_dom (IPR001523) - T[38-54] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PAX2_HUMAN	70.079 %	191	1.82E-59
PAX7_HUMAN	84.615 %	228	6.36E-73
PAX3_HUMAN	81.295 %	236	1.97E-76