Aniseed - Transcript Card

Transcript 'Phfumi.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S26580.g09949.01.t

Possible name(s)

CLVS1; RLBP1; TTPAL

Gene model

Phfumi.CG.MTP2014.S26580.g09949

Location

S26580 [432 / 1,275]

Sequences

Amino acid sequence

Length: 281

>Phfumi.CG.MTP2014.S26580.g09949.01.p
MSNGKRYECTLSPALLEKAASELNEPKENEKRLQAIDKLRSSYNAEKYGPLVRSDDAFIL
RFLRAKKFKQDKALKCLQNYHLLHKDFESVFRKVRNPESLKPIMDSGVFYVAEGTTDDGV
TIVIYRPGLLDPKGDIFDVAAYCILCIEVLLESEAYQICGNSTVEDLENFNLKLITKLPI
SAIKKMNSIWEDAMPTRFKCLHVLHEGKVFDVLFALFKPFMKNKIIKRIRLHGSRYSEMF
TDVNPHLLPPYIGGTGPNPEVANKIWCDKIKDKMCNIYSRE

Nucleotide sequence

Length: 843

>Phfumi.CG.MTP2014.S26580.g09949.01.t
ATGTCTAATGGAAAACGATATGAATGTACCCTAAGCCCTGCCCTACTTGAAAAAGCTGCA
TCAGAGTTAAACGAACCAAAAGAAAATGAGAAACGGCTGCAAGCCATTGACAAACTCAGA
TCCTCCTACAATGCTGAGAAATATGGTCCACTGGTCAGGAGCGATGATGCGTTTATCCTA
CGGTTTCTGCGGGCAAAAAAGTTTAAGCAGGATAAAGCTCTAAAGTGCTTGCAGAATTAC
CATCTACTGCACAAAGACTTTGAAAGTGTGTTTCGCAAAGTGCGGAACCCAGAATCTCTT
AAGCCCATCATGGATTCTGGGGTCTTTTATGTTGCAGAAGGCACCACAGATGATGGGGTG
ACCATTGTCATCTATCGACCAGGCTTACTTGACCCAAAAGGAGATATCTTTGACGTTGCA
GCCTATTGTATCCTCTGCATTGAGGTTTTGTTGGAAAGTGAAGCATACCAAATCTGTGGC
AACTCTACTGTTGAGGATCTCGAAAACTTTAACCTCAAGCTGATAACCAAACTGCCGATA
AGTGCTATAAAAAAGATGAACTCAATATGGGAAGATGCGATGCCTACACGCTTTAAATGT
TTGCATGTGCTACATGAAGGTAAAGTTTTTGATGTGCTCTTTGCCCTGTTTAAACCATTC
ATGAAAAACAAGATTATTAAGAGAATCAGACTGCATGGGTCAAGGTACAGTGAAATGTTT
ACTGATGTTAATCCACATTTGCTACCTCCATACATTGGTGGCACTGGGCCAAACCCAGAA
GTGGCAAATAAAATTTGGTGTGACAAAATTAAAGATAAAATGTGCAACATTTATTCTAGG
GAG

InterProScan

SUPERFAMILY	CRAL/TRIO_N_dom_sf (IPR036273) - T[3-87] 4.84E-15
Pfam	CRAL/TRIO_N_dom (IPR011074) - T[46-79] 7.7E-7
SMART	CRAL/TRIO_N_dom (IPR011074) - T[55-80] 7.8E-8
Gene3D	CRAL-TRIO_dom_sf (IPR036865) - T[87-265] 1.1E-43
ProSiteProfiles	CRAL-TRIO_dom (IPR001251) - T[97-260] 13.01
CDD	CRAL-TRIO_dom (IPR001251) - T[100-255] 3.79475E-26
SUPERFAMILY	CRAL-TRIO_dom_sf (IPR036865) - T[100-272] 3.27E-37
SMART	CRAL-TRIO_dom (IPR001251) - T[103-257] 1.4E-21
Pfam	CRAL-TRIO_dom (IPR001251) - T[105-255] 6.9E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TTPAL_HUMAN	34.496 %	138	7.27E-39
RLBP1_HUMAN	28.346 %	117	5.49E-31
CLVS1_HUMAN	33.858 %	117	7.17E-31