- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C11.177.v1...' >
- Transcript 'KH2012:KH.L126.5.v1....' >
- Transcript 'Boleac.CG.SB_v3.S216...' >
- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S2.g00056.01.t
Possible name(s)
RORA; RORB; RORC
Gene model
Location
S2 [331,177 / 338,264]
Amino acid sequence
Length: 809
>Phfumi.CG.MTP2014.S2.g00056.01.p
MNNVEFSDRGMATSRHGDLLRCRDYADGSFAPVLTQHRSPIDMISPNYANLHQQQIQAAE
HMTATTASYQALSYAHQEHAHLQHGSFVPLSEHEPTENLQVGLNGRTYAENLVNFQGYGN
HASGVDSQNENGWIESSQVGPTRPSYEELRWRDSYRNVPARAQIEIIPCKVCGDKSSGIH
YGVITCEGCKGFFRRSQQNNYAYTCPRHGNCIIDRTNRNRCQHCRLQKCLRAGMSKDAVK
FGRMSKKQRDRLYLEVLKQQQIRASQSQEPEVYNTNNNIPTTHSSHVIPNPSSYYAGSDV
SNGDVISPYNNSPPSAQSTPTSEITVKTEPGLESRGSSLTPSPTNNKYPDNNETNKPFPQ
PPAVMEDFPYPTMDHLVRNVCEAYYKTCQYTLAELQAFLQQTSSNDDLLRYNSMSQESMW
SFCAGKLTMAIQHVVEFAKHIHGFMTLDQHDQIILLKAGCLEIVMVRMSRAFNSNNSTVF
FDDKYTPIDAFRKLGCDDLVSGLFQLSHDMNDLKLTEDEIALFTCAVLITGDRRGLREPA
RLNALQSVILGALQNRFRETHMDNSSIIRQLLVHMNTLRKLSDLHSKHFFRARQELHNID
ASLPPLYKELFLCDESVLHQNNHVVRYHDPRDLHRDGRSASHMTDDDVAPVESISPQYLD
SKNSSEVGSNASSGSAVDSGCVLLAGSAGPDLFQPVTSRSSSTSSVSSSGTAPLGNLSCD
EISPMLPDMKPLELVQGNQLNLDDTLQRHRLAEAERLLEAAMHEQVSMSQPTSYPLQMTM
LAHSQQASNIHRHTTAGDAALGGIPHLSI
Nucleotide sequence
Length: 2,430
>Phfumi.CG.MTP2014.S2.g00056.01.t
ATGAACAACGTTGAGTTTTCCGACCGTGGAATGGCGACTTCGCGCCACGGTGACCTTCTC
AGATGTCGTGACTACGCCGACGGTTCGTTTGCCCCAGTGCTAACCCAGCACCGCTCACCC
ATCGATATGATATCACCAAATTACGCGAATCTCCATCAGCAGCAAATACAGGCGGCAGAG
CACATGACCGCCACGACAGCTTCTTACCAAGCCTTGTCGTACGCTCACCAGGAGCACGCC
CACCTTCAGCACGGGTCGTTCGTACCCTTGAGCGAGCACGAGCCGACAGAAAATCTTCAA
GTCGGTTTAAACGGTCGCACCTACGCCGAAAACTTAGTGAACTTTCAGGGTTACGGCAAC
CACGCAAGTGGCGTTGACTCACAGAATGAAAACGGCTGGATTGAGAGCAGCCAAGTTGGC
CCAACCCGGCCCAGTTATGAGGAGTTGAGGTGGAGGGATTCGTATAGAAACGTTCCGGCA
CGTGCCCAAATCGAAATTATCCCCTGCAAAGTATGTGGAGACAAGTCGTCCGGAATTCAT
TACGGAGTCATAACGTGCGAAGGGTGCAAGGGCTTCTTTCGCCGTAGCCAGCAAAACAAC
TATGCCTATACTTGCCCCCGACACGGAAACTGCATCATTGACCGCACCAACAGAAATAGA
TGTCAGCATTGCCGGCTGCAGAAGTGTCTTCGGGCTGGAATGTCAAAAGATGCCGTCAAG
TTTGGGCGAATGTCGAAGAAACAACGAGATCGTTTGTACCTCGAAGTGCTGAAGCAGCAG
CAAATTCGTGCAAGCCAATCTCAAGAGCCTGAGGTCTATAACACAAACAACAACATACCG
ACAACGCACAGTTCGCACGTCATCCCCAATCCTTCCTCATACTACGCCGGCTCTGACGTC
AGCAACGGTGACGTCATCTCGCCGTACAACAACTCGCCGCCCTCCGCTCAGTCCACGCCC
ACGTCGGAGATCACAGTCAAAACCGAACCCGGTTTGGAGTCACGTGGTTCAAGCCTTACG
CCGTCCCCTACCAACAACAAATACCCCGACAACAACGAAACGAACAAACCTTTCCCCCAA
CCTCCAGCAGTCATGGAAGATTTTCCCTATCCAACAATGGACCATCTGGTGCGCAACGTG
TGTGAGGCTTATTACAAGACCTGTCAATACACACTCGCCGAGCTACAGGCCTTCTTACAA
CAAACTTCGTCCAACGACGATCTCTTGCGTTATAATTCCATGAGCCAGGAGTCAATGTGG
AGTTTTTGTGCTGGCAAGTTAACTATGGCGATTCAACATGTTGTCGAATTCGCCAAACAC
ATTCACGGCTTTATGACTCTCGACCAACACGATCAGATTATTCTCCTCAAAGCAGGTTGT
CTCGAGATAGTGATGGTCCGAATGTCCCGGGCATTCAACAGCAACAACTCGACTGTATTC
TTTGACGACAAATACACACCCATCGACGCCTTTAGAAAACTCGGCTGCGATGATCTGGTG
TCTGGCCTATTTCAACTTTCCCACGACATGAACGATTTGAAACTTACCGAAGACGAGATT
GCTCTTTTCACGTGCGCTGTGCTCATCACTGGAGATCGTCGCGGGCTTCGGGAGCCAGCC
AGATTGAACGCCCTCCAGTCCGTTATACTCGGAGCCCTGCAGAACCGATTTCGCGAAACT
CACATGGACAATTCCTCCATCATTCGTCAGCTTCTGGTCCACATGAACACTCTGAGAAAG
TTGTCAGACCTCCATTCCAAACACTTCTTCCGAGCCCGCCAGGAACTCCACAACATTGAT
GCCAGTCTTCCGCCGCTCTACAAGGAGCTCTTCCTTTGCGACGAGTCGGTCCTGCACCAA
AACAACCACGTGGTGCGCTATCACGACCCACGTGACCTGCACAGGGACGGCAGGAGCGCA
AGTCACATGACCGACGATGACGTGGCTCCGGTCGAATCGATTTCCCCGCAGTATTTGGAT
TCGAAGAACTCGTCTGAAGTCGGGTCGAATGCCAGTTCCGGGTCGGCTGTGGACAGTGGC
TGTGTGTTGCTGGCGGGTTCTGCCGGTCCGGATTTATTCCAGCCGGTCACGAGTCGCAGT
TCGTCTACGTCATCGGTGAGCAGCAGTGGCACCGCCCCGCTCGGGAACCTGAGCTGCGAC
GAAATATCGCCGATGCTGCCCGACATGAAGCCCCTGGAGCTCGTGCAAGGCAACCAGCTG
AATCTGGATGACACTCTGCAACGACACCGTCTAGCGGAAGCCGAAAGACTCCTGGAAGCT
GCGATGCATGAGCAAGTCTCCATGTCGCAGCCTACCTCCTACCCTTTGCAAATGACGATG
CTTGCGCACAGCCAGCAGGCAAGCAATATCCATCGCCACACCACAGCCGGGGATGCCGCA
CTTGGGGGAATACCCCACCTTTCCATATGA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[161-270] 1.0E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[166-241] 19.89 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[166-237] 2.9E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[168-236] 4.4E-32 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[169-195] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[169-185] 6.7E-18 - T[185-200] 6.7E-18 - T[218-226] 6.7E-18 - T[226-234] 6.7E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[230-240] 1.2E-19 - T[426-447] 1.2E-19 - T[447-463] 1.2E-19 - T[513-528] 1.2E-19 - T[570-587] 1.2E-19 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[371-611] 4.2E-56 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[372-611] 38.456 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[423-444] 4.2E-8 - T[449-468] 4.2E-8 - T[513-535] 4.2E-8 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[425-582] 7.8E-26 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[428-593] 1.2E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 43.838 % | 356 | 3.48E-114 |
| RORB_HUMAN | 47.78 % | 387 | 1.73E-126 |
| RORA_HUMAN | 45 % | 384 | 1.08E-124 |