Aniseed - Transcript Card

Transcript 'Phfumi.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S3148.g05475.02.t

Possible name(s)

AP2B1; AP3D1; COPB1

Gene model

Phfumi.CG.MTP2014.S3148.g05475

Location

S3148 [5,830 / 11,872]

Sequences

Amino acid sequence

Length: 664

>Phfumi.CG.MTP2014.S3148.g05475.02.p
LIYSPSVTDSEPVNEAKLKNDIEHGDIRIKTEALKKVILMTLNGEKLQGLLMTIIKYLLP
SDDHTVKKLLLIFWEIWPKTDAQGKLRPEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLR
QPELIEPLMPAIRTCLEHRHSYVRRNAVLAIYTIYRKFDQLIPDAPELIHDFLEGEKDAS
CKRNAFMMLIHADQERALDYLSTCIDQVNTFNDILQLVIVELVYKVCNANPNERSRFIRC
IYNLLQSTSQAVRYEAAGTLVTLSNAPTAIRAAAQCYIELIVKEADNNVKLIVLDRLIDL
KDHPLHEKVLQEMVMDILRALASPDLEVRRKTLDLALDLVTSRNVEDFVKFMEKEITKSA
NVQGHDNTDKYRQMLVKRMHLCAIKFPDTAAIIIPVLMEFLGDSEELAACDVLLFVREAV
HRYDIHKGLILDKLLEVFSTIRAAKIMRGVLWILGEYCDGTSRILRFVTEVRKSVGDLPI
VEHELKLAAGEAEENQDKEEKSAQSAAARRVTEMGTYVTQSAFSVGSKSSGGKRGDEIKR
PPLRQFFMDGDFSLAGSLSTALTKQALRFMSNCTDLRKQNSFAAQCMLILSSVLHLGKSS
LPKKPISDDEVDRLASCLKVLSERHQVMSDIFTSKCRGSLSTLLEIRAAEENVQRKAAEK
NKSA

Nucleotide sequence

Length: 1,992

>Phfumi.CG.MTP2014.S3148.g05475.02.t
TTGATATACAGTCCATCTGTTACTGATTCTGAGCCAGTTAATGAGGCAAAATTAAAGAAT
GACATCGAGCATGGCGATATAAGAATCAAGACCGAGGCATTAAAGAAGGTCATTCTAATG
ACCTTGAATGGAGAAAAGTTACAAGGTTTATTGATGACAATCATAAAATACCTTCTTCCA
TCTGATGATCACACAGTCAAGAAACTGCTTCTGATATTTTGGGAGATTTGGCCAAAAACT
GATGCACAGGGCAAACTGAGGCCTGAGATGATTTTGGTCTGTGATGCATACAGAAAGGAT
TTGCAACATCCGAATGAATTCATTCGTGGTTCCACCTTAAGATTTCTGTGTAAGCTTCGT
CAGCCCGAATTAATTGAACCTCTCATGCCGGCTATCAGGACTTGTCTTGAACATCGTCAC
AGCTATGTGAGAAGAAACGCTGTGTTGGCAATCTACACAATTTACAGGAAATTTGATCAG
CTAATTCCTGATGCTCCAGAGTTGATTCACGATTTCCTGGAAGGTGAAAAAGATGCTTCA
TGTAAGAGAAACGCTTTCATGATGTTGATCCACGCTGACCAGGAAAGGGCCCTAGACTAT
CTCAGCACTTGCATTGACCAGGTGAACACTTTCAATGATATTCTGCAACTCGTGATAGTT
GAGTTGGTGTACAAAGTGTGCAACGCCAATCCCAATGAAAGGTCCAGGTTTATCCGATGC
ATTTACAATCTGCTCCAATCAACGAGCCAGGCGGTTCGATATGAAGCTGCTGGAACGCTT
GTTACCCTATCCAATGCCCCAACTGCAATCAGAGCTGCAGCCCAGTGTTACATTGAGTTG
ATTGTGAAAGAGGCTGACAATAATGTAAAGTTGATCGTACTCGATCGATTGATCGACCTA
AAAGATCATCCACTACATGAAAAAGTTTTGCAGGAAATGGTGATGGACATTTTGAGAGCG
CTGGCTTCACCCGACCTTGAAGTTCGACGCAAAACTCTCGACCTTGCACTTGACCTTGTG
ACTTCGAGAAATGTTGAAGACTTTGTCAAGTTTATGGAAAAGGAGATCACCAAGTCGGCA
AATGTCCAAGGCCACGACAATACCGACAAGTACAGACAGATGTTGGTGAAGCGAATGCAC
TTGTGTGCCATCAAGTTTCCTGATACTGCTGCTATAATCATTCCCGTGCTGATGGAGTTT
TTGGGTGATAGCGAGGAATTGGCAGCTTGCGATGTTTTGTTGTTCGTACGTGAAGCTGTC
CACAGATACGACATACACAAGGGTCTCATCCTTGACAAACTTCTGGAAGTGTTTTCAACC
ATTCGAGCTGCAAAGATTATGCGTGGTGTGCTGTGGATTTTGGGCGAGTACTGCGATGGA
ACATCGAGGATTCTCAGATTTGTCACCGAAGTTCGCAAGTCTGTCGGGGATCTCCCCATT
GTGGAACACGAGCTGAAGTTAGCAGCTGGGGAGGCCGAGGAAAATCAAGACAAAGAGGAA
AAATCTGCTCAGTCTGCAGCAGCCCGGCGCGTCACAGAGATGGGAACTTACGTCACTCAA
TCGGCTTTCAGTGTGGGAAGCAAGTCTTCGGGAGGTAAGAGAGGTGATGAAATAAAACGA
CCACCACTTCGTCAGTTCTTCATGGATGGCGATTTCTCGCTCGCTGGATCGCTCTCTACT
GCCCTCACCAAACAAGCTCTGAGGTTCATGTCGAACTGCACCGACCTAAGGAAGCAAAAT
TCATTTGCGGCACAGTGTATGTTGATCTTGTCAAGCGTTCTTCATCTCGGCAAATCCTCT
CTGCCCAAGAAACCGATCAGTGATGACGAAGTTGATCGACTCGCTTCATGTTTGAAGGTT
TTGTCGGAGCGCCACCAAGTGATGTCGGACATTTTCACGTCAAAGTGTCGAGGGTCTCTC
TCCACTTTGCTTGAGATCAGAGCTGCGGAGGAAAATGTGCAAAGAAAGGCAGCAGAGAAA
AACAAGAGTGCC

InterProScan

Gene3D	ARM-like (IPR011989) - T[7-521] 3.5E-93
PANTHER	COPB1 (IPR016460) - T[9-661] 2.8E-264
Pfam	Clathrin/coatomer_adapt-like_N (IPR002553) - T[14-529] 4.8E-110
SUPERFAMILY	ARM-type_fold (IPR016024) - T[16-573] 6.97E-77

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
COPB_HUMAN	67.381 %	907	0