- Clone 'ciad065m19' >
- Transcript 'Harore.CG.MTP2014.S9...' >
- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S315.g01731.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S315 [3,683 / 11,109]
Amino acid sequence
Length: 728
>Phfumi.CG.MTP2014.S315.g01731.01.p
MLTKFESKSARVKGLSFHPKRPWVLSSLHNGAIQLWDYRMCTMIDKFEEHDGPVRGICFH
NQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTTVFHHDYPWILSASDDQTIRIW
NWQSRSCIAVLTGHNHYVMSAHFHPSEDLVVSASLDQTARVWDIAGLRKKNLSPSSGSDE
SVRGTGVGGPASIELFGSTDVMIKHVLEVFIEFWILACHPTLNLFAAGHDGGMVIFKLER
ERPAFATHENFLYYVKDKYLRKLDFTTSKDTAAMQLRSGSKASVYSMSYNPVENAVVITS
RASNIENSHYDLYQIPKTTDSSNPDAPEGKRSSGLTAVWVARSRFAVLDRTHTIIIKNHK
NEITKKVQVAAVDEIFYAGTGSLLLRTPEGITLYDVQQKRALASVKLAKVKYVVWSNDMS
HVALLAKHNIAICNRKLESLATIHENVRVKSGAWEESGVFIYTTSNHIKYALTNGDHGII
RTLDLPIYVTRVKGTSVYCLDRETRPRVLSIDPTEFRFKMALVNRKYDEVLHMVRNTKLV
GQSIIAYLQQKGYPEVALHFVKDDKTRFSLALECGDIEVALAAAKALDDKQCWVALGEVA
LAHGNHQVVEMAYQRTKDFDKLSFLYLLTGNLEKLRKMMKIAEIRKDTSGHYQAALYLGD
VAERVKVLRGCGQKSLAYLTAATHGLEEEAEQLKDEVVPDVDPNAVLLQPPPPIKQCEEN
WPLLTVSK
Nucleotide sequence
Length: 2,184
>Phfumi.CG.MTP2014.S315.g01731.01.t
ATGTTGACAAAATTTGAATCTAAATCGGCTCGTGTGAAAGGTTTGTCTTTTCACCCTAAA
CGGCCATGGGTTTTGTCATCGCTTCACAATGGAGCAATCCAGTTGTGGGATTATCGAATG
TGCACAATGATTGACAAATTCGAGGAACATGATGGTCCTGTTAGAGGAATTTGTTTTCAC
AACCAACAACCACTGTTTGTATCTGGTGGAGATGACTATAAGATAAAGATCTGGAACTAC
AAGCTGAGAAGATGCCTATTTACTTTGCTTGGTCATTTGGATTACATCCGAACAACCGTT
TTCCATCATGACTATCCCTGGATTCTCTCTGCTTCTGATGATCAGACCATCAGGATTTGG
AATTGGCAATCTCGTTCTTGTATTGCCGTCCTCACCGGGCACAACCATTATGTGATGTCT
GCTCACTTTCATCCATCAGAAGATTTGGTTGTTTCTGCTTCACTTGATCAAACTGCAAGA
GTTTGGGATATAGCTGGTTTGCGCAAAAAAAATCTTTCCCCGAGTTCTGGTTCAGATGAA
TCAGTTCGTGGGACAGGTGTCGGTGGTCCTGCCTCAATCGAGCTGTTCGGTAGCACCGAT
GTCATGATAAAACATGTGCTCGAGGTATTCATTGAGTTTTGGATTTTGGCTTGCCATCCA
ACTTTGAATCTGTTTGCTGCTGGTCATGATGGTGGGATGGTGATCTTCAAATTGGAACGT
GAAAGGCCAGCTTTTGCCACTCATGAGAACTTCCTCTACTACGTGAAAGACAAGTACCTT
CGCAAATTGGATTTCACCACAAGTAAAGACACTGCGGCTATGCAGCTCAGAAGTGGTTCA
AAGGCATCAGTCTACTCTATGTCTTACAATCCGGTCGAAAATGCTGTTGTTATCACATCT
CGTGCATCAAACATTGAAAACTCTCATTATGATCTTTATCAAATACCGAAAACAACTGAT
TCTTCCAATCCCGATGCACCAGAAGGAAAGAGATCATCAGGGTTAACTGCTGTCTGGGTG
GCACGAAGCAGGTTCGCAGTACTTGACCGAACACACACCATCATCATCAAAAACCACAAG
AACGAGATCACCAAGAAGGTTCAGGTTGCGGCGGTTGATGAAATATTTTACGCTGGAACT
GGTTCGTTGTTGCTCCGTACCCCGGAAGGCATCACTCTCTACGATGTGCAGCAGAAGAGA
GCCCTCGCATCTGTGAAGCTTGCCAAGGTGAAGTACGTGGTTTGGTCCAACGATATGTCA
CATGTTGCTCTGCTGGCTAAACACAACATCGCAATTTGCAACCGCAAACTTGAGTCGCTT
GCAACTATCCATGAGAATGTTCGAGTGAAGTCGGGAGCTTGGGAAGAGAGTGGTGTGTTC
ATCTACACCACTTCAAACCACATCAAATACGCTCTCACCAATGGTGATCATGGCATCATC
CGAACCCTCGATCTTCCCATCTATGTCACCAGAGTTAAAGGGACGAGTGTTTATTGTTTG
GATCGAGAAACCCGACCCAGAGTTCTCTCCATTGACCCAACTGAATTCCGATTCAAGATG
GCACTAGTCAATCGCAAGTATGATGAAGTCCTGCACATGGTGCGTAACACTAAGCTGGTC
GGCCAGTCGATCATCGCATACCTGCAACAGAAGGGATATCCAGAAGTAGCTTTGCACTTT
GTCAAGGACGATAAAACAAGGTTTTCATTGGCTTTGGAATGTGGTGATATTGAGGTGGCA
TTGGCTGCAGCAAAAGCACTTGATGACAAGCAATGTTGGGTTGCACTCGGAGAAGTTGCA
CTTGCTCATGGGAACCATCAAGTGGTGGAAATGGCTTATCAACGAACTAAGGATTTTGAC
AAACTGTCGTTTCTGTATTTGCTCACCGGAAATCTTGAGAAGTTGAGAAAAATGATGAAA
ATTGCTGAAATTAGAAAGGACACATCTGGTCACTACCAGGCTGCTCTCTATCTTGGTGAT
GTTGCTGAAAGAGTTAAAGTTCTCCGAGGATGTGGACAAAAATCCCTTGCTTACCTCACC
GCTGCTACTCATGGATTGGAAGAGGAGGCGGAACAGCTCAAGGACGAAGTTGTTCCCGAT
GTTGATCCCAATGCAGTTCTTCTCCAACCTCCACCTCCCATCAAGCAGTGCGAGGAAAAC
TGGCCACTACTTACTGTCAGCAAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-239] 4.1E-79 |
| SMART |
WD40_repeat (IPR001680) - T[2-37] 10.0 - T[40-79] 2.0E-6 - T[82-121] 3.0E-7 - T[124-163] 9.4E-10 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-303] 2.5E-48 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[5-172] 37.334 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[5-39] 9.138 - T[47-88] 12.48 - T[89-130] 12.714 - T[131-164] 14.385 |
| Pfam |
WD40_repeat (IPR001680) - T[12-37] 0.28 - T[46-79] 1.2E-5 - T[84-121] 1.3E-7 - T[126-163] 4.2E-6 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[66-80] 2.1E-5 - T[108-122] 2.1E-5 - T[150-164] 2.1E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[150-164] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[264-685] 5.2E-137 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 64.049 % | 1046 | 0 |
| COPB2_HUMAN | 23.711 % | 186 | 1.92E-49 |
| LIS1_HUMAN | 40 % | 99.8 | 2.87E-22 |