- Transcript 'Mooccu.CG.ELv1_2.S30...' >
- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S315.g01731.02.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S315 [7,750 / 10,382]
Amino acid sequence
Length: 302
>Phfumi.CG.MTP2014.S315.g01731.02.p
VYPVQIWNYKLRRCLFTLLGHLDYIRTTVFHHDYPWILSASDDQTIRIWNWQSRSCIAVL
TGHNHYVMSAHFHPSEDLVVSASLDQTARVWDIAGLRKKNLSPSSGSDESVRGTGVGGPA
SIELFGSTDVMIKHVLEGHDRGVNWACFHPTMPLVVTSADDRLVKLWRMNESKAWEVDSC
RGHYNNVFWILACHPTLNLFAAGHDGGMVIFKLERERPAFATHENFLYYVKDKYLRKLDF
TTSKDTAAMQLRSGSKASVYSMSYNPVENAVVITSRASNIENSHYDLYQIPKTTDSSNPD
GK
Nucleotide sequence
Length: 906
>Phfumi.CG.MTP2014.S315.g01731.02.t
GTGTATCCTGTGCAGATCTGGAACTACAAGCTGAGAAGATGCCTATTTACTTTGCTTGGT
CATTTGGATTACATCCGAACAACCGTTTTCCATCATGACTATCCCTGGATTCTCTCTGCT
TCTGATGATCAGACCATCAGGATTTGGAATTGGCAATCTCGTTCTTGTATTGCCGTCCTC
ACCGGGCACAACCATTATGTGATGTCTGCTCACTTTCATCCATCAGAAGATTTGGTTGTT
TCTGCTTCACTTGATCAAACTGCAAGAGTTTGGGATATAGCTGGTTTGCGCAAAAAAAAT
CTTTCCCCGAGTTCTGGTTCAGATGAATCAGTTCGTGGGACAGGTGTCGGTGGTCCTGCC
TCAATCGAGCTGTTCGGTAGCACCGATGTCATGATAAAACATGTGCTCGAGGGCCATGAT
CGTGGAGTGAATTGGGCTTGTTTCCATCCCACTATGCCTCTGGTTGTTACATCGGCGGAT
GACCGGCTTGTAAAACTGTGGCGCATGAACGAATCGAAAGCGTGGGAGGTCGATTCGTGC
CGTGGACATTACAACAATGTGTTTTGGATTTTGGCTTGCCATCCAACTTTGAATCTGTTT
GCTGCTGGTCATGATGGTGGGATGGTGATCTTCAAATTGGAACGTGAAAGGCCAGCTTTT
GCCACTCATGAGAACTTCCTCTACTACGTGAAAGACAAGTACCTTCGCAAATTGGATTTC
ACCACAAGTAAAGACACTGCGGCTATGCAGCTCAGAAGTGGTTCAAAGGCATCAGTCTAC
TCTATGTCTTACAATCCGGTCGAAAATGCTGTTGTTATCACATCTCGTGCATCAAACATT
GAAAACTCTCATTATGATCTTTATCAAATACCGAAAACAACTGATTCTTCCAATCCCGAT
GGTAAG
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-221] 25.602 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-214] 1.2E-74 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-275] 5.5E-42 |
| SMART |
WD40_repeat (IPR001680) - T[11-50] 3.0E-7 - T[53-92] 9.4E-10 - T[129-168] 3.8E-5 - T[173-212] 100.0 |
| Pfam |
WD40_repeat (IPR001680) - T[13-50] 4.0E-8 - T[55-92] 1.3E-6 - T[134-167] 3.8E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[18-59] 12.714 - T[60-93] 14.385 - T[136-177] 11.778 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[37-51] 7.5E-7 - T[79-93] 7.5E-7 - T[155-169] 7.5E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[79-93] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 66.276 % | 481 | 1.04E-161 |
| COPB2_HUMAN | 30.962 % | 122 | 3.2E-31 |
| LIS1_HUMAN | 38.202 % | 89 | 6.02E-20 |