- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S3182.g05509.01.t
Possible name(s)
C6; C8A; C8B
Gene model
Location
S3182 [2,751 / 8,713]
Amino acid sequence
Length: 557
>Phfumi.CG.MTP2014.S3182.g05509.01.p
MKVNRLRTVAVLLILVVCFTEHSIACKDDPPPPVNCAVSSWGNWGSCSKTCDLGSQSRSR
HVTTNSAHGGAGCPSLSQSRSCREAECPIDCQWGEWGEWTDCSTYGTKSRFRNITTPSMF
DGWDCAGTNIEVAGGCSPPVVPEFQCETDYILCRDEITCVRDTLACNGDDDCTDHSDELH
CDDIFSPCSTPKDRIPSVDVVGAAFNILRNEETGTILDNWRYDGRCTIVTSGDHDGQEFR
QPANILSYRFQAKADTTFFMNSYACTKNFIQEEREEQQNRMELGFSFIFLSSKVAYSSDS
KRTTIIENGSKMDSKYFKTRSRIEVAQFRTLRNNLFTTYLFRRREAELPERFDYAEYSKI
ITDFGTHYYSSGVLGGEFETIYRYDRSELTESTLTEEEQKHCLESELSVWYKGASGGVGS
SVCTTNALSQRYGGSFIAAAKEVVSSVRGGSSDTAASLTFTHQETPSKEDFDAWAETIKD
NPAVVDFMLAPISAVFASSAKKANMERALYEYMIRFDPDVCPPECLNEGAPIVVDEGKEC
KCICAVNYSGPACRDKN
Nucleotide sequence
Length: 1,674
>Phfumi.CG.MTP2014.S3182.g05509.01.t
ATGAAAGTGAATCGATTACGGACCGTAGCAGTTCTGCTGATACTGGTCGTGTGTTTTACT
GAACACTCGATCGCATGCAAGGATGATCCCCCTCCCCCTGTTAATTGTGCAGTTTCTAGT
TGGGGGAACTGGGGATCGTGTTCGAAAACCTGTGATCTAGGTTCCCAGAGTCGAAGCCGA
CATGTCACAACGAATTCTGCACACGGGGGAGCAGGTTGCCCTTCGCTGTCGCAAAGTCGT
AGCTGCAGAGAGGCCGAATGCCCTATTGATTGTCAGTGGGGAGAGTGGGGAGAATGGACT
GACTGTTCGACATACGGAACCAAGAGTCGCTTCAGAAACATTACAACCCCGTCAATGTTC
GATGGATGGGATTGTGCAGGGACAAACATAGAAGTCGCGGGTGGTTGTTCGCCCCCTGTA
GTTCCCGAGTTTCAATGCGAAACCGACTATATTTTATGCCGAGACGAAATAACTTGTGTT
CGAGACACTCTGGCCTGCAACGGGGACGACGACTGCACTGATCATTCGGACGAACTGCAC
TGCGACGACATATTTAGTCCTTGTAGTACGCCCAAAGACCGAATTCCAAGTGTTGACGTT
GTTGGGGCTGCATTCAACATATTGCGAAATGAAGAGACAGGGACCATTCTGGACAACTGG
CGATACGATGGAAGGTGCACGATTGTCACCAGCGGTGATCACGACGGTCAGGAATTTCGT
CAGCCGGCTAACATTTTGTCCTACCGGTTTCAGGCAAAAGCGGACACCACATTTTTCATG
AATTCATACGCATGCACCAAGAACTTTATACAAGAGGAGAGAGAGGAACAACAAAACAGG
ATGGAACTTGGATTTTCATTTATCTTCTTGAGCTCGAAGGTAGCTTACAGTTCCGACTCC
AAAAGGACAACCATTATCGAGAATGGCAGTAAAATGGATTCAAAGTATTTCAAAACACGA
AGCAGAATCGAAGTTGCACAATTCAGGACCCTTCGAAACAATCTCTTTACAACCTACTTG
TTTCGTCGACGCGAGGCTGAATTGCCCGAACGTTTCGACTATGCTGAATATTCAAAGATA
ATTACCGACTTCGGCACGCATTACTATTCGAGCGGAGTTTTGGGCGGAGAGTTTGAAACC
ATTTATCGTTACGATAGATCGGAATTGACAGAATCAACCCTTACTGAAGAAGAACAGAAG
CATTGTCTAGAGAGTGAACTGTCAGTGTGGTACAAAGGTGCTTCTGGTGGAGTCGGATCA
AGTGTATGTACAACGAATGCCCTCTCTCAACGTTACGGAGGGAGTTTTATAGCAGCAGCA
AAAGAGGTCGTTTCCTCCGTACGAGGGGGTTCGTCGGACACGGCTGCTTCACTTACGTTT
ACCCACCAAGAAACCCCTTCCAAAGAAGATTTTGACGCCTGGGCCGAAACAATCAAGGAC
AACCCTGCGGTTGTGGATTTCATGCTGGCTCCAATCTCGGCGGTGTTCGCATCAAGTGCA
AAGAAAGCTAACATGGAACGAGCACTCTACGAGTACATGATCAGATTTGATCCAGATGTT
TGTCCTCCCGAATGTTTGAATGAAGGAGCGCCTATAGTGGTCGACGAGGGCAAAGAATGC
AAGTGCATCTGTGCAGTCAACTATAGCGGCCCGGCCTGCAGGGATAAAAATTAA
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[34-82] 1.2E-12 - T[89-133] 4.0E-7 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[34-82] 3.01E-10 - T[89-132] 1.16E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[35-88] 11.71 - T[90-173] 9.501 |
| SMART |
TSP1_rpt (IPR000884) - T[38-88] 9.3E-11 - T[93-160] 6.2E-4 |
| Pfam |
TSP1_rpt (IPR000884) - T[39-87] 2.1E-6 - T[94-131] 0.0071 |
| PRINTS |
MAC_perforin (IPR001862) - T[109-125] 5.1E-21 - T[152-172] 5.1E-21 - T[346-368] 5.1E-21 - T[473-492] 5.1E-21 - T[522-542] 5.1E-21 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[142-181] 1.17E-6 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[145-182] 10.9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[145-181] 1.3E-6 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[145-183] 7.7E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[146-181] 3.67174E-6 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[159-181] . |
| ProSiteProfiles |
MACPF (IPR020864) - T[184-527] 29.023 |
| Pfam |
MACPF (IPR020864) - T[306-512] 7.1E-32 |
| SMART |
MACPF (IPR020864) - T[315-514] 4.6E-31 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[357-368] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[517-554] 8.579 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[542-553] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 32.294 % | 278 | 1.64E-83 |
| CO8A_HUMAN | 28.46 % | 208 | 8.04E-60 |
| CO8B_HUMAN | 28.063 % | 193 | 1.77E-54 |