- Transcript 'Phfumi.CG.MTP2014.S3...' >
- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Transcript 'Phfumi.CG.MTP2014.S3...' >
- EST 'AHC0AAA222YB07_RM1' >
- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S3182.g05509.02.t
Possible name(s)
C6; C8A; C8B
Gene model
Location
S3182 [3,577 / 15,417]
Amino acid sequence
Length: 389
>Phfumi.CG.MTP2014.S3182.g05509.02.p
VSSWGNWGSCSKTCDLGSQSRSRHVTTNSAHGGAGCPSLSQSRSCREAECPIDCQWGEWG
EWTDCSTYGTKSRFRNITTPSMFDGWDCAGTNIEVAGGCSPPVVPEFQCETDYILCRDEI
TCVRDTLACNGDDDCTDHSDELHCDDIFSPCSTPKDRIPSVDVVGAATLRNNLFTTYLFR
RREAELPERFDYAEYSKIITDFGTHYYSSGVLGGEFETIYRYDRSELTESTLTEEEQKHC
LESELSVWYKGASAEKCSTNALSQRYDGSFIGAAKDVVVTVKGGSSDTAASLSFSQQETP
SKEDFDAWAATVKDNPAVVDFMLAPVSAVFESKIKQAYMDEALYQYLKRFDPEVCPPKCL
NGGSPIVTEEGKECNCLCEPNFFGPACRD
Nucleotide sequence
Length: 1,167
>Phfumi.CG.MTP2014.S3182.g05509.02.t
GTTTCTAGTTGGGGGAACTGGGGATCGTGTTCGAAAACCTGTGATCTAGGTTCCCAGAGT
CGAAGCCGACATGTCACAACGAATTCTGCACACGGGGGAGCAGGTTGCCCTTCGCTGTCG
CAAAGTCGTAGCTGCAGAGAGGCCGAATGCCCTATTGATTGTCAGTGGGGAGAGTGGGGA
GAATGGACTGACTGTTCGACATACGGAACCAAGAGTCGCTTCAGAAACATTACAACCCCG
TCAATGTTCGATGGATGGGATTGTGCAGGGACAAACATAGAAGTCGCGGGTGGTTGTTCG
CCCCCTGTAGTTCCCGAGTTTCAATGCGAAACCGACTATATTTTATGCCGAGACGAAATA
ACTTGTGTTCGAGACACTCTGGCCTGCAACGGGGACGACGACTGCACTGATCATTCGGAC
GAACTGCACTGCGACGACATATTTAGTCCTTGTAGTACGCCCAAAGACCGAATTCCAAGT
GTTGACGTTGTTGGGGCTGCGACCCTTCGAAACAATCTCTTTACAACCTACTTGTTTCGT
CGACGCGAGGCTGAATTGCCCGAACGTTTCGACTATGCTGAATATTCAAAGATAATTACC
GACTTCGGCACGCATTACTATTCGAGCGGAGTTTTGGGCGGAGAGTTTGAAACCATTTAT
CGTTACGATAGATCGGAATTGACAGAATCAACCCTTACTGAAGAAGAACAGAAGCATTGT
CTAGAGAGTGAACTGTCAGTGTGGTACAAAGGTGCTTCTGCTGAAAAATGTTCGACAAAT
GCCCTGTCGCAACGCTATGACGGGAGTTTCATCGGAGCGGCAAAAGATGTTGTAGTTACG
GTGAAAGGCGGATCGTCTGACACCGCCGCATCTCTAAGTTTCTCCCAACAAGAAACACCT
TCGAAGGAAGATTTTGACGCCTGGGCGGCAACCGTCAAGGACAATCCTGCAGTGGTCGAC
TTTATGTTGGCTCCCGTTTCAGCCGTGTTCGAGTCCAAGATTAAACAGGCATACATGGAC
GAGGCACTCTACCAATACCTTAAACGGTTTGACCCAGAAGTCTGCCCTCCAAAATGCTTG
AACGGCGGATCACCGATCGTGACAGAGGAAGGAAAAGAATGCAATTGTCTCTGTGAACCC
AACTTTTTCGGCCCAGCCTGCAGAGAT
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[1-45] 2.5E-11 - T[52-96] 2.5E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[1-51] 10.367 - T[53-136] 9.501 |
| ProSiteProfiles |
MACPF (IPR020864) - T[1-361] 14.721 |
| SMART |
TSP1_rpt (IPR000884) - T[1-51] 9.3E-11 - T[56-123] 6.2E-4 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[2-45] 6.02E-9 - T[52-95] 7.19E-8 |
| Pfam |
TSP1_rpt (IPR000884) - T[2-50] 1.3E-6 - T[57-94] 0.0044 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[106-144] 6.81E-7 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[108-145] 10.9 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[108-146] 7.7E-5 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[108-144] 8.0E-7 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[109-144] 1.11215E-5 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[122-144] . |
| SMART |
MACPF (IPR020864) - T[156-348] 2.9E-23 |
| Pfam |
MACPF (IPR020864) - T[177-346] 1.3E-26 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[195-206] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[351-388] 8.708 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[376-387] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 36.017 % | 155 | 1.95E-41 |
| CO8A_HUMAN | 27.953 % | 104 | 2.42E-24 |
| CO7_HUMAN | 30.075 % | 110 | 2.24E-26 |