- Transcript 'Phfumi.CG.MTP2014.S3...' >
- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S3182.g05509.04.t
Possible name(s)
C6; C8A; C8B
Gene model
Location
S3182 [11,857 / 15,423]
Amino acid sequence
Length: 380
>Phfumi.CG.MTP2014.S3182.g05509.04.p
VSSWTGWGTCSKTCELGSQRRTRYVTRNPKHGGKKCPWLAETRGCRELAECPINCQWGEW
GEWTNCSSYGTKSRIRNITTPAMFGGDDCTGINTDVDSGCVPSPASTMECANDSLMCQDG
LTCVRDTLACNGDDDCTDFSDELHCNEILSPCSTPKDRIPSIDVVGAGTLRNNLILSHSF
RQRELDLPEHFDYAEYSKIITDFGTHYYSSGVLGGEFESIFRFDSLTEEEQRACIENEIF
SIKSEKCSTNALSQRYDGSFIGAAKDVVVTVKGGSSDTAASLSFSQQETPSKEDFDAWAA
TVKDNPAVVDFMLAPVSAVFESKIKQAYMDEALYQYLKRFDPEVCPPKCLNGGSPIVTEE
GKECNCLCEPNFFGPACRDR
Nucleotide sequence
Length: 1,143
>Phfumi.CG.MTP2014.S3182.g05509.04.t
GTTTCCTCGTGGACTGGCTGGGGAACATGTTCAAAGACTTGCGAATTAGGCTCCCAGAGG
CGAACAAGATACGTGACACGAAATCCAAAGCACGGTGGTAAAAAATGCCCTTGGCTGGCG
GAAACCCGTGGTTGCAGAGAATTGGCCGAATGCCCCATTAACTGTCAGTGGGGCGAATGG
GGCGAATGGACTAACTGTTCGTCATACGGCACAAAAAGTCGTATCAGAAACATCACGACG
CCGGCAATGTTTGGCGGCGATGACTGTACAGGGATAAACACGGATGTTGACTCGGGGTGT
GTGCCTTCTCCGGCCTCAACGATGGAATGTGCCAATGACAGTCTCATGTGTCAGGATGGT
TTAACTTGTGTTCGAGACACACTGGCTTGCAACGGAGATGACGACTGCACTGATTTTTCG
GACGAATTGCATTGTAATGAAATACTCAGCCCTTGTTCCACTCCCAAAGATCGAATTCCG
AGTATTGACGTAGTTGGTGCAGGAACGCTTCGAAACAATCTGATTTTATCCCACTCGTTT
CGCCAACGTGAGTTAGATTTACCCGAACACTTCGACTATGCTGAATACTCAAAAATCATC
ACTGATTTCGGCACGCATTACTATTCAAGCGGAGTCTTGGGTGGAGAGTTTGAATCAATA
TTTCGCTTTGATAGCCTTACCGAAGAGGAACAAAGAGCTTGTATTGAAAATGAAATTTTT
TCTATAAAATCTGAAAAATGTTCGACAAATGCCCTGTCGCAACGCTATGACGGGAGTTTC
ATCGGAGCGGCAAAAGATGTTGTAGTTACGGTGAAAGGCGGATCGTCTGACACCGCCGCA
TCTCTAAGTTTCTCCCAACAAGAAACACCTTCGAAGGAAGATTTTGACGCCTGGGCGGCA
ACCGTCAAGGACAATCCTGCAGTGGTCGACTTTATGTTGGCTCCCGTTTCAGCCGTGTTC
GAGTCCAAGATTAAACAGGCATACATGGACGAGGCACTCTACCAATACCTTAAACGGTTT
GACCCAGAAGTCTGCCCTCCAAAATGCTTGAACGGCGGATCACCGATCGTGACAGAGGAA
GGAAAAGAATGCAATTGTCTCTGTGAACCCAACTTTTTCGGCCCAGCCTGCAGAGATCGG
TAA
| ProSiteProfiles |
MACPF (IPR020864) - T[1-351] 12.098 |
| SMART |
TSP1_rpt (IPR000884) - T[1-52] 6.4E-11 - T[57-137] 0.025 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[1-52] 9.759 - T[54-118] 9.222 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[1-45] 9.1E-11 - T[53-100] 1.3E-7 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[2-45] 1.11E-8 - T[53-95] 1.57E-7 |
| Pfam |
TSP1_rpt (IPR000884) - T[2-51] 2.5E-7 - T[58-94] 6.7E-4 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[107-145] 2.49E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[109-145] 2.2E-7 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[109-147] 6.7E-6 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[109-146] 11.038 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[110-145] 7.55697E-6 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[123-145] . |
| SMART |
MACPF (IPR020864) - T[157-338] 8.9E-14 |
| Pfam |
MACPF (IPR020864) - T[171-336] 1.9E-23 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[196-207] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[341-378] 8.708 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[366-377] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 34.728 % | 142 | 5.58E-37 |
| CO8A_HUMAN | 29.004 % | 94 | 7.58E-21 |
| CO7_HUMAN | 31.416 % | 104 | 3.25E-24 |