Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S3718.g05919.01.t

Possible name(s)

CIRBP; RBM3; RBMXL2

Gene model

Phfumi.CG.MTP2014.S3718.g05919

Location

S3718 [8,561 / 12,255]

Sequences

Amino acid sequence

Length: 150

>Phfumi.CG.MTP2014.S3718.g05919.01.p
MAANKLYVGNLSYQVDDDMLRDEFSNHGDVVEVAVVFDRETGRSRGFGFVTFNTDQEAAV
AKEKLNDCCFHGRNITVSKANPRGGGGGGGGGGEYGGGRGYGGGGGYGGGYGGGGYGGGG
GGYGGGGGGRHNRGGGGYDNYGGGQGYDDG

Nucleotide sequence

Length: 450

>Phfumi.CG.MTP2014.S3718.g05919.01.t
ATGGCAGCCAATAAATTATATGTTGGCAATCTTTCATACCAAGTAGATGATGACATGCTT
CGAGATGAATTTTCAAACCATGGAGATGTAGTTGAAGTGGCAGTTGTGTTTGACCGTGAA
ACTGGTAGATCCAGAGGTTTTGGCTTTGTCACATTTAATACGGATCAAGAAGCTGCTGTG
GCTAAAGAAAAGTTAAATGACTGCTGTTTCCATGGAAGAAATATCACTGTGAGTAAAGCA
AACCCTAGAGGTGGAGGTGGCGGTGGCGGTGGAGGTGGTGAATATGGAGGTGGCCGCGGT
TATGGAGGAGGAGGAGGCTATGGCGGTGGCTACGGTGGAGGAGGATATGGTGGTGGTGGC
GGTGGATATGGGGGTGGTGGTGGTGGAAGGCACAATCGGGGTGGCGGTGGATATGACAAC
TACGGAGGGGGGCAAGGATATGATGATGGA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-101] 3.8E-29
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[4-108] 2.15E-29
ProSiteProfiles	RRM_dom (IPR000504) - T[4-82] 19.212
SMART	RRM_dom (IPR000504) - T[5-78] 2.0E-26
Pfam	RRM_dom (IPR000504) - T[6-75] 1.0E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RBM3_HUMAN	48.684 %	75.1	6.56E-18