- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S3860.g06009.01.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
S3860 [558 / 14,452]
Amino acid sequence
Length: 748
>Phfumi.CG.MTP2014.S3860.g06009.01.p
QAEVDFVLEVLQPTNLLPTNGSTQYAELGKSVTMELELVVDDKLQTGPIQWEKNNRPVCA
GVVCTLSDLTFEDAGDYRVSVNTSLDGATTNINLIVRGKPNAPMFFNYVTTDDPLLVNFL
WEHAYDNNAPVEEYKIEFEENQFAPGIWRTLKSGILPDQKNVTVNLSPYVNYQFRAVARN
VVGWGKTSNVVGRYQTPSGAPVLNPSGVSGKGTSSDNLVIKWKPVKEIDQNGPGFAYIVS
YCLAKTCKPDGPWMTADVDGNTRMYEVRQTPVYEKYFIKVRSVNSDGEAPEPKVAVGYSG
EATPVAYPLNVQVETDEENPNVARLSWEPVANVDVRGKLRGYAVSYGELGDDWEQVTVGN
VTNATVHGLKPDVIYQFAVSVFNSLAAGPRSEIIHKKTPESIPGAPSNLRLVDRTATSLK
VDWDSPNEPNGKIIGYVLTCSGVNSSSETNEIELLEPGLRIKSLSPGKIYEITVVAKTAK
GVGTEKAVTQVETHPEGAPGAVKFNATVDETNVTVTWQKTDGLPAEKYYVESRRRDSDEW
TRIGTYSSEQTNEPVVFSSFDPVSTYYVRVVAVNPYGETAMSPVVVEIGGTAVNQGSITG
EIWFVVVIALAALLLVVLVVICLLRKKRGGKYSVAEKEGRLVDTESNVSNRQEVGEYNDE
KEDEVKKPLTPKETTNIPSNGGASTTPSNGVPLLVRTRGDSVGGDSIDAFADAEAREFNE
DGSFIGQYGTIPSESVSNSAATSPDAEN
Nucleotide sequence
Length: 2,244
>Phfumi.CG.MTP2014.S3860.g06009.01.t
CAAGCTGAGGTCGATTTTGTACTGGAAGTTCTTCAACCAACTAATCTGCTACCAACCAAT
GGTTCAACGCAATACGCTGAACTCGGAAAATCTGTTACAATGGAATTAGAGCTTGTTGTT
GATGACAAACTTCAAACTGGACCGATTCAATGGGAAAAGAATAACAGGCCAGTGTGTGCT
GGTGTCGTGTGTACCTTATCTGATCTCACTTTCGAAGATGCTGGAGACTACAGAGTGTCC
GTTAACACGTCGCTAGATGGCGCAACAACTAACATCAATCTTATCGTCCGTGGAAAGCCG
AACGCTCCGATGTTTTTCAATTACGTGACAACCGATGACCCCCTGCTTGTGAACTTTCTG
TGGGAGCATGCCTATGATAACAACGCACCTGTAGAAGAATACAAAATTGAATTTGAGGAA
AATCAATTTGCACCTGGCATCTGGCGAACACTGAAGAGCGGAATTTTACCGGATCAGAAA
AATGTCACTGTCAACCTTTCACCTTATGTGAATTACCAATTCCGAGCTGTTGCAAGAAAT
GTTGTTGGCTGGGGGAAAACTAGCAATGTTGTAGGAAGATACCAGACCCCGTCAGGAGCA
CCGGTCTTGAATCCCTCTGGTGTGTCAGGAAAAGGAACGAGCAGTGACAATTTGGTGATA
AAGTGGAAACCTGTGAAAGAAATTGATCAAAACGGACCTGGGTTTGCCTATATAGTCAGT
TACTGTCTGGCGAAAACTTGCAAACCTGACGGGCCTTGGATGACTGCTGACGTTGACGGA
AACACAAGAATGTATGAAGTCAGACAGACTCCTGTGTACGAGAAGTACTTTATCAAAGTT
CGAAGTGTTAACAGCGACGGGGAAGCCCCCGAGCCGAAAGTAGCGGTCGGATACTCTGGG
GAAGCCACTCCTGTAGCCTATCCCTTGAACGTCCAAGTCGAAACTGATGAAGAAAATCCC
AACGTGGCCCGGTTGTCATGGGAACCCGTGGCGAATGTTGATGTTCGTGGCAAGTTACGT
GGGTATGCTGTTTCATACGGCGAACTGGGCGATGATTGGGAACAAGTCACCGTTGGAAAT
GTTACAAATGCAACCGTCCACGGCCTGAAACCGGACGTGATCTACCAGTTTGCTGTGTCG
GTTTTTAACTCCCTAGCGGCTGGGCCACGATCAGAGATTATCCACAAGAAGACACCAGAG
AGCATACCGGGAGCTCCTTCCAATCTTCGTCTTGTAGACAGAACTGCTACGTCACTCAAG
GTCGACTGGGATTCCCCGAATGAACCAAATGGGAAAATTATTGGATATGTTCTGACTTGC
TCAGGTGTAAACAGCTCAAGCGAGACAAACGAAATTGAACTTCTTGAACCTGGTTTGAGA
ATTAAAAGTCTTTCGCCGGGGAAAATCTACGAAATCACAGTTGTGGCAAAAACAGCTAAA
GGCGTGGGAACAGAGAAAGCTGTAACACAGGTGGAAACTCACCCTGAAGGAGCACCTGGA
GCGGTCAAGTTCAACGCTACGGTGGATGAAACTAACGTCACGGTCACGTGGCAGAAGACC
GACGGTCTTCCCGCCGAAAAGTATTATGTGGAAAGCCGCCGAAGAGATTCTGATGAATGG
ACTCGAATTGGAACTTACTCGAGCGAGCAGACGAATGAACCAGTTGTGTTTTCGTCGTTT
GATCCTGTTAGCACTTACTACGTGCGTGTAGTGGCGGTGAATCCGTACGGAGAGACGGCG
ATGAGCCCAGTTGTGGTGGAGATCGGGGGAACAGCCGTTAACCAAGGATCTATCACTGGC
GAGATTTGGTTTGTGGTGGTCATCGCCTTGGCTGCGTTACTGCTCGTTGTACTAGTAGTA
ATTTGTCTGCTGCGGAAAAAGCGAGGTGGCAAATACTCAGTCGCTGAAAAAGAGGGCCGA
CTGGTCGACACAGAATCAAATGTTTCAAATCGACAAGAAGTTGGCGAATATAACGACGAG
AAAGAAGATGAAGTGAAGAAGCCACTCACTCCTAAGGAAACGACAAACATTCCTTCAAAC
GGAGGTGCCTCCACTACGCCCTCTAACGGCGTACCGCTTTTAGTCCGCACGAGAGGTGAC
AGTGTTGGTGGAGATTCAATCGATGCTTTTGCCGACGCCGAAGCTCGCGAATTCAACGAA
GACGGTTCGTTTATAGGCCAATATGGGACAATCCCGAGCGAAAGTGTGAGCAACTCCGCG
GCGACATCTCCCGACGCCGAAAAT
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[22-103] 3.41E-7 |
| Gene3D |
Ig-like_fold (IPR013783) - T[85-201] 2.5E-15 - T[202-300] 1.1E-17 - T[301-396] 6.1E-17 - T[397-492] 2.5E-19 - T[493-588] 1.8E-12 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[99-291] 5.47E-21 - T[308-495] 1.67E-35 - T[488-585] 4.76E-13 |
| SMART |
FN3_dom (IPR003961) - T[100-185] 2.9 - T[202-289] 0.013 - T[305-390] 2.4E-5 - T[403-483] 1.7E-13 - T[496-579] 0.001 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[102-199] 13.105 - T[204-302] 16.773 - T[307-401] 18.58 - T[405-496] 19.227 - T[498-594] 13.578 |
| CDD |
FN3_dom (IPR003961) - T[121-191] 3.32272E-7 - T[204-288] 1.17168E-5 - T[308-398] 4.95965E-10 - T[403-493] 7.53601E-14 - T[497-586] 6.26329E-9 |
| Pfam |
FN3_dom (IPR003961) - T[204-290] 8.6E-8 - T[308-391] 1.3E-10 - T[405-485] 7.9E-14 - T[498-578] 5.1E-6 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[625-730] 6.1E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 31.447 % | 284 | 5.76E-82 |
| NCHL1_HUMAN | 27.5 % | 231 | 1.05E-63 |
| L1CAM_HUMAN | 31.78 % | 260 | 8.07E-74 |