- Transcript 'Phfumi.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S4554.g06432.01.t
Possible name(s)
HNF4A; HNF4G; RXRA
Gene model
Location
S4554 [6,797 / 12,577]
Amino acid sequence
Length: 332
>Phfumi.CG.MTP2014.S4554.g06432.01.p
SPPSLSGGPTTVSNFAFGHTNPISPTNSMQGDAPMIPISPDPNGMPAHMINGHGSDHDSN
QSIHENDGVRAFCAICGDRATGKHYGANSCDGCKGFFRRSVRKNHQYQCRFSRNCTVDKD
KRNQCRYCRLRKCFRAGMKKEAVQNERDRISTKKSPIDDSTSLSVTTLLNADNMSKQTSA
AVGGEPVDITIDNKKIASVNDVCDSMRQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAG
ENLLMGVAKRSLPYQDILLLGNDFIIPRHCPEVEINRVAVRVLDELVRPLNELALDDTEF
ACLKAIVFFHPDARGLSNSAKIKTMRSQVMXN
Nucleotide sequence
Length: 996
>Phfumi.CG.MTP2014.S4554.g06432.01.t
TCTCCTCCATCTTTGTCCGGTGGACCCACCACAGTTTCAAACTTTGCCTTTGGACACACG
AACCCCATAAGCCCCACCAACAGCATGCAAGGGGACGCCCCCATGATACCCATCTCACCT
GACCCCAATGGTATGCCGGCTCATATGATCAACGGTCACGGGAGCGATCACGATTCGAAT
CAGTCGATTCATGAAAATGACGGCGTTCGAGCGTTTTGCGCAATTTGTGGAGATCGGGCC
ACCGGGAAACACTACGGTGCGAACAGCTGTGATGGATGCAAAGGCTTCTTTAGACGGAGC
GTCCGCAAGAACCATCAATACCAATGCAGATTCAGTCGCAATTGCACAGTGGACAAAGAC
AAGCGGAATCAATGCCGCTACTGTCGTCTGCGAAAATGCTTTCGAGCGGGGATGAAAAAG
GAAGCCGTGCAGAACGAGCGGGATCGAATTAGCACAAAAAAGTCGCCCATCGACGATTCT
ACGTCACTTTCAGTCACTACTTTGTTAAACGCGGACAACATGTCGAAGCAGACATCTGCA
GCTGTGGGGGGAGAACCGGTTGACATCACGATCGACAATAAGAAAATTGCCTCGGTTAAT
GACGTATGCGACTCGATGCGTCAGCAACTGCTGGTTCTGGTTGAGTGGGCAAAGTACATT
CCCGCCTTTTCCGAGTTGCCGCTTGACGACCAGGTGGCGCTGCTGCGTGCGCACGCGGGG
GAGAATCTTCTCATGGGGGTCGCCAAACGGTCGCTGCCCTATCAGGACATACTGTTGCTG
GGCAACGACTTTATAATTCCAAGACATTGCCCCGAAGTTGAAATAAATCGAGTCGCAGTC
AGAGTACTCGACGAACTCGTTCGGCCGCTCAATGAACTCGCACTCGACGACACAGAGTTT
GCTTGTCTCAAGGCAATCGTCTTCTTTCATCCAGATGCTCGTGGTTTGAGCAACTCGGCC
AAGATCAAAACCATGCGTTCACAAGTCATGNCTAAT
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[61-153] 1.1E-33 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[70-145] 21.094 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[70-141] 2.5E-37 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[72-140] 1.4E-29 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[73-89] 1.4E-18 - T[89-104] 1.4E-18 - T[122-130] 1.4E-18 - T[130-138] 1.4E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[73-99] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[134-144] 1.2E-21 - T[205-226] 1.2E-21 - T[226-242] 1.2E-21 - T[293-308] 1.2E-21 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[139-330] 8.39E-44 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[160-332] 39.997 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[195-330] 1.1E-25 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[204-329] 8.3E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RXRA_HUMAN | 40 % | 226 | 1.49E-70 |
| HNF4A_HUMAN | 70.722 % | 402 | 5.64E-139 |
| HNF4G_HUMAN | 71.591 % | 396 | 8.0E-138 |