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  1. Transcript 'Phmamm.CG.MTP2014.S4...'
  2. Transcript 'Moocci.CG.ELv1_2.S48...'
  3. Region 'REG00000116'
  4. Transcript 'KH2012:KH.C5.290.v1....'
  5. Transcript 'Phfumi.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S4585.g06451.01.t

Possible name(s)

SMG5; SMG6; SMG7

Location

S4585 [1,139 / 12,984]

Sequences

Amino acid sequence

Length: 870

>Phfumi.CG.MTP2014.S4585.g06451.01.p
MSRSSADYSVKHTVSPEVKSISAKRLYRGVLECVKKLDAGHQHRRSLISLFQPNQVKLRH
KLREACERLLFTYPIEYGRKAEELLWKKVYYDVIHTVKSGRKFQSNAPGALQQRHLEPHF
RQFLYSAMGFYHYLLLRLQSKVSSGLVEIDFSLATRPLHGRSNMPSGHGNYGMPKNPQDE
DENDLEEWMISTSYRILVCLGDLSRYQMEFGGSRSRPNRFYQLALLARPNAGMPHNQIAT
LSGHHAWWGLVAAYHYCRSLHAEITFEGAEGNLQKLLDRNKKLFYQLPTEALDTIVSADV
YKKEHTRIFIISFLYLCDLLRPKTYATDVEIAGLCKRLIDALIVCLTNINNDPPDFEADS
VGEKVHKLPCGFRGETIKLCNFLLGRHPTSGQKPEPVPGNPVSHHTNKHHHYIQQHRINE
AIVFKICVLCLVNVHDLQTCRSNRSSAAIAFALAFFSHLLGHLVQCLSKAELANSALANG
SDSKAEGDGKSARNRKSKVRMRRRRRVGGRKGAADGDLSEGEDTMAGGDAASDSELTEDS
DTESESFSESSGSGTRLSQEDLSSHDGEESDTPEAEHPDKKFPPLETKKSNAPAGELPQQ
NVASLQDLSNKMFQPSSLRRKITLAPSFLQHLSSPAKPAKVVEKDKADDVTAASQATADI
GVEEKGGNVSNVNINSNDVEIKSIQVERTDADEIREDPILSEQLKSVTTKPEVKKDENEK
ENQSTDGAKQGSDRTGDKQLAAKPRISIQKREKDTTVVATSWRQTRPLPEDHVIHNMNAV
RDANVKSGIDLSKPYLDMTDVQQVVIRTCRIRHLCRALSRVDDIDIDVINRTESGDDVVG
REHFTGPEEEAVDPQMELEVRGIMSCNKLS

Nucleotide sequence

Length: 2,610

>Phfumi.CG.MTP2014.S4585.g06451.01.t
ATGTCTCGGTCAAGTGCGGATTACTCAGTGAAGCACACAGTCTCTCCGGAGGTGAAAAGT
ATTTCTGCAAAGCGACTCTATCGTGGAGTCTTGGAGTGTGTTAAAAAGCTGGATGCTGGT
CACCAACATCGGCGTAGTTTGATCAGTCTGTTTCAACCAAATCAAGTGAAGCTAAGGCAT
AAACTAAGAGAAGCATGTGAACGCTTGTTGTTCACCTATCCTATTGAGTACGGACGAAAG
GCAGAAGAACTTTTGTGGAAGAAAGTCTACTATGATGTCATACATACAGTAAAATCTGGT
CGCAAATTCCAATCAAATGCTCCTGGAGCGTTACAACAACGGCACTTGGAGCCTCATTTC
CGACAGTTTCTCTACTCTGCAATGGGCTTTTACCATTACTTGCTTTTGCGTTTGCAATCC
AAAGTCAGTTCAGGGTTGGTAGAAATAGATTTTTCACTTGCAACGAGGCCACTGCATGGA
CGTAGCAACATGCCGTCTGGACATGGCAATTATGGAATGCCAAAAAATCCTCAGGATGAG
GATGAAAATGATTTGGAGGAATGGATGATAAGTACGAGCTACAGAATTCTTGTCTGTCTT
GGTGATTTAAGTAGATACCAAATGGAGTTTGGTGGCTCTCGTTCAAGACCAAACCGTTTT
TACCAACTAGCACTTCTGGCTCGACCAAATGCTGGAATGCCACACAATCAAATAGCCACA
CTTTCTGGCCACCATGCCTGGTGGGGCCTCGTTGCTGCATATCACTATTGTCGATCACTT
CATGCCGAAATTACCTTCGAGGGAGCAGAGGGCAACTTGCAGAAACTGCTTGACCGCAAT
AAGAAGCTTTTCTACCAATTGCCAACTGAAGCTCTGGACACTATTGTATCTGCAGATGTA
TATAAGAAAGAACACACGAGAATTTTCATCATCTCTTTTCTCTATCTGTGCGACCTCTTG
CGACCGAAAACCTATGCAACTGACGTGGAGATTGCTGGCCTGTGCAAGCGTCTCATCGAT
GCTCTGATCGTCTGCCTAACCAATATTAATAACGACCCACCGGATTTCGAAGCAGACTCG
GTTGGAGAAAAAGTTCACAAGTTGCCTTGCGGCTTTAGGGGTGAAACTATTAAACTTTGT
AACTTTTTGCTTGGCAGACATCCAACCAGCGGTCAGAAACCAGAACCGGTTCCAGGCAAT
CCGGTTTCTCACCACACGAACAAACATCACCATTACATCCAACAACACAGAATCAACGAA
GCTATCGTGTTTAAGATTTGTGTGCTGTGTCTAGTCAACGTACACGACCTACAGACGTGT
CGTTCAAACCGTTCGTCTGCCGCCATCGCTTTCGCCCTCGCCTTCTTCTCCCATCTCCTC
GGCCATCTCGTGCAGTGTTTGTCGAAAGCTGAACTCGCCAACAGTGCCCTGGCCAACGGG
TCGGACTCCAAAGCTGAAGGCGATGGAAAGAGCGCCAGGAACAGAAAGAGCAAAGTGAGA
ATGCGTCGGAGGAGGAGAGTGGGAGGGAGAAAGGGAGCAGCGGATGGAGATCTTAGCGAG
GGAGAAGACACCATGGCTGGCGGAGATGCTGCTTCCGACTCTGAACTAACCGAAGACTCT
GACACCGAATCCGAGTCCTTTTCCGAGTCGAGCGGATCCGGAACTCGCCTCAGTCAGGAG
GATCTTTCCTCCCATGATGGGGAAGAGAGCGACACTCCGGAGGCAGAACATCCGGACAAA
AAATTTCCTCCTCTCGAAACGAAGAAGTCGAACGCACCAGCGGGGGAACTCCCACAGCAA
AACGTTGCCAGTCTACAAGATTTATCCAACAAAATGTTTCAGCCTTCTTCATTGCGCCGC
AAGATTACCTTAGCCCCATCATTCCTTCAACACCTCAGTTCACCAGCAAAACCAGCCAAG
GTCGTGGAAAAGGACAAGGCGGATGACGTCACTGCTGCGTCACAGGCGACTGCAGACATC
GGCGTCGAAGAGAAAGGCGGTAATGTCAGCAATGTCAACATCAACAGCAACGACGTCGAG
ATAAAGTCGATCCAAGTTGAACGAACTGACGCAGATGAAATCCGAGAAGATCCGATTTTA
TCCGAACAGCTGAAAAGCGTCACAACCAAACCCGAAGTAAAGAAAGACGAGAACGAGAAA
GAGAATCAATCGACGGATGGAGCCAAACAAGGGTCCGATCGAACGGGTGATAAGCAGCTT
GCTGCTAAACCGAGAATATCGATACAGAAAAGAGAAAAAGATACAACCGTCGTTGCCACC
AGTTGGCGCCAGACGCGCCCGCTTCCTGAAGATCACGTGATCCACAACATGAACGCAGTC
CGCGACGCGAACGTGAAAAGTGGAATTGACTTGAGCAAACCCTACCTGGATATGACCGAT
GTACAACAGGTGGTCATCAGGACCTGCCGTATTCGCCACCTCTGCCGCGCCCTCTCGCGC
GTTGATGACATCGACATTGACGTCATCAATCGCACCGAGTCGGGTGATGACGTCGTCGGT
CGGGAGCATTTTACCGGACCAGAAGAGGAAGCTGTTGACCCCCAGATGGAGCTAGAGGTG
CGTGGAATTATGTCCTGCAACAAGCTTTCA

InterProScan

SUPERFAMILY
TPR-like_helical_dom_sf (IPR011990) - T[27-823] 4.55E-41
Pfam
EST1 (IPR019458) - T[80-210] 9.2E-20
Pfam
DNA/RNA-bd_Est1-type (IPR018834) - T[219-342] 1.2E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMG5_HUMAN 31.003 % 257 2.0E-72





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