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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA259YG17'
  2. Transcript 'Phfumi.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S459.g02104.01.t

Possible name(s)

NDC1

Location

S459 [17,363 / 29,473]

Sequences

Amino acid sequence

Length: 641

>Phfumi.CG.MTP2014.S459.g02104.01.p
MDSHWLLLHEFKWRTYLALFWSWTTNFVFLLAFFFFWIANPWNHIHMVHDYVLHLLSFQV
WFIIIALAFVSAFYIALFAKHFSVVPKVEVSHYETLQKCFSGKHLLFVTCHGLLAVVIFI
LVSFLAKSQYSSPLTDCSAQSPTGEICFNEHWLLLLLFSGVVGTVNFIVNEKEQKYCLSF
PLVQQTRLLYLKCNFSTIIKNAVFSCTRILRNFVIFYYFLGFVARDLVAGFLGLNTCDYH
VISVLNIFSFLPILWTLVLCGTLLLVLHDVSWNLFNLCNTKRYNFLVESVFPEDATKLLT
ANLSEKQPKLVQHLAFQYLSHVACHSANVRKQIFSLESGGVGNKASKWNVIANECLLCIK
NLTNALTDHNLKHSSHFDNDQKGISRLSSKSSTSSQSSTDEKSPFLSVSTLRRRPLKSDG
SNSPNMSYFDVSSLDATATNLGNVNSPFRNGPNLVIPTPKLWTRQLYKGSFSNSPMTQSH
DSCNENVDQQQLNTRVNGFLARIEKSIKKFSIVSYLIKKMPDRNAANLFSGRCVCKWALQ
SISVLVEASFTKDDYGVVQRRLDEILAALLDLHIALEKYNKLPVSSSSPAVLSLLREIRG
LRNECKSAIYRITNTFGSHLDAVPVNPEHKRKLCGFVEHKE

Nucleotide sequence

Length: 1,926

>Phfumi.CG.MTP2014.S459.g02104.01.t
ATGGATTCTCATTGGCTACTTTTACACGAGTTTAAGTGGCGAACCTATTTAGCACTGTTT
TGGTCATGGACAACAAACTTTGTTTTTCTACTTGCTTTTTTCTTTTTCTGGATTGCCAAC
CCTTGGAATCATATTCACATGGTTCATGATTATGTTCTTCACCTGTTATCATTTCAAGTG
TGGTTCATAATAATCGCATTAGCATTTGTAAGTGCGTTCTACATTGCATTATTTGCCAAA
CACTTTTCAGTTGTCCCCAAGGTGGAAGTTTCTCATTACGAAACTCTTCAAAAATGTTTC
AGTGGAAAGCATTTGCTCTTTGTGACATGCCATGGATTGCTGGCTGTTGTCATTTTCATC
TTAGTATCTTTTTTGGCAAAGAGTCAGTATTCATCACCTCTTACTGACTGCTCTGCCCAA
TCACCAACTGGAGAAATTTGCTTCAATGAACATTGGTTGTTGTTACTTCTGTTCAGTGGA
GTTGTTGGAACTGTCAACTTTATTGTCAATGAAAAGGAGCAAAAATATTGTTTGAGTTTT
CCATTAGTTCAACAAACACGACTTCTTTATTTGAAATGCAACTTTTCCACGATAATAAAG
AATGCTGTATTTTCATGCACAAGAATACTACGCAATTTTGTAATCTTTTATTACTTCCTT
GGATTTGTAGCAAGAGATTTGGTAGCAGGTTTCCTCGGACTTAATACATGTGATTACCAT
GTAATCAGTGTATTGAACATATTTTCATTTCTGCCGATTCTTTGGACGCTGGTTTTGTGT
GGGACTTTGCTATTGGTCTTGCATGATGTGTCTTGGAATTTATTTAATCTGTGCAACACA
AAGCGATACAATTTCCTCGTCGAGTCAGTGTTCCCAGAGGATGCAACCAAGTTACTCACT
GCCAATTTGAGCGAGAAACAACCCAAACTTGTACAGCATTTGGCTTTCCAGTATCTGAGC
CATGTCGCTTGCCACTCAGCAAATGTTCGAAAACAAATATTTTCCTTGGAGAGTGGGGGT
GTTGGCAACAAGGCTTCGAAATGGAATGTGATTGCCAACGAGTGCTTGCTTTGTATCAAA
AACTTAACCAATGCCTTAACTGACCACAATCTGAAACATTCAAGCCATTTTGATAATGAT
CAAAAGGGCATTTCCCGTCTCTCTTCAAAATCATCCACCTCTTCTCAGTCTAGCACAGAT
GAAAAATCTCCGTTTTTATCTGTCTCCACGCTGCGTCGACGTCCTCTGAAATCCGATGGG
AGCAACTCTCCAAACATGTCTTACTTTGACGTGTCATCTTTGGATGCCACTGCAACAAAC
TTGGGTAATGTAAACTCGCCGTTTCGCAATGGGCCGAACCTGGTTATCCCCACGCCCAAA
TTGTGGACTCGGCAACTATACAAGGGTAGCTTCAGCAACTCCCCGATGACACAAAGCCAC
GATAGTTGCAACGAAAATGTCGACCAGCAGCAGTTGAATACACGAGTAAACGGATTCCTC
GCAAGGATCGAAAAGTCGATCAAGAAGTTCTCCATCGTTTCGTACTTGATTAAAAAGATG
CCAGACCGCAACGCTGCCAACTTGTTTTCCGGGCGATGCGTGTGTAAGTGGGCACTGCAG
AGCATTTCGGTTTTGGTGGAAGCCTCATTTACCAAAGACGACTACGGCGTGGTGCAGCGA
CGTCTTGATGAGATTCTTGCCGCCTTGCTGGATCTACACATTGCTTTGGAAAAATACAAC
AAACTGCCGGTCTCATCTTCGTCGCCGGCGGTACTTTCCCTTTTGCGGGAAATCCGCGGT
CTAAGGAACGAATGCAAGAGCGCAATTTATCGCATCACCAACACGTTTGGCTCCCATCTT
GACGCTGTTCCTGTGAATCCAGAGCACAAACGCAAGCTGTGTGGATTTGTCGAACACAAG
GAATGA

InterProScan

PANTHER
Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[2-641] 1.9E-101
Pfam
Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[26-633] 1.6E-70

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NDC1_HUMAN 28.358 % 222 9.83E-64