- Transcript 'Harore.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C5.278.v1....' >
- Clone 'cicl052d02' >
- Transcript 'KH2012:KH.C9.709.v1....' >
- Transcript 'Phfumi.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S5204.g06794.01.t
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
S5204 [9,337 / 10,307]
Amino acid sequence
Length: 187
>Phfumi.CG.MTP2014.S5204.g06794.01.p
MTGYAYFVQTCREEHRKKHPNEQVVFAEFSRKCAKRWKEMNDKEKRTFNDMAEKDRHRYE
CEMKNYTPLSGEGKRKKKKKDPNAPKRPQSAFFLFCADRRATVKQENPSYTVGDIARELG
KKWSEANPDLKSKYVQAGEKEKEKYNKEMAAYRATLEKGAPVAKKQKVEKPASSSSDSSS
ESDADSD
Nucleotide sequence
Length: 564
>Phfumi.CG.MTP2014.S5204.g06794.01.t
ATGACCGGGTATGCCTATTTCGTGCAAACCTGCAGAGAGGAACACCGCAAGAAACATCCC
AATGAACAAGTTGTTTTTGCCGAATTCTCAAGGAAATGCGCAAAAAGATGGAAGGAAATG
AATGACAAGGAGAAACGCACATTCAACGACATGGCTGAAAAAGACAGACACCGATACGAG
TGCGAGATGAAGAACTACACCCCTCTCAGCGGAGAAGGAAAACGCAAGAAGAAAAAGAAG
GACCCCAATGCACCAAAACGCCCTCAGTCTGCCTTTTTCCTTTTTTGTGCTGATCGTCGG
GCAACAGTAAAACAAGAAAACCCTTCATATACAGTTGGTGATATTGCCAGGGAGCTTGGA
AAGAAATGGTCGGAAGCCAATCCTGATCTTAAAAGCAAATATGTACAAGCTGGAGAAAAG
GAGAAAGAAAAATACAACAAGGAAATGGCAGCTTATCGAGCGACACTGGAAAAGGGTGCA
CCTGTTGCTAAAAAGCAGAAGGTCGAGAAGCCTGCATCATCCTCTTCCGACAGCAGCAGC
GAAAGTGATGCGGATAGTGATTAA
| SMART |
HMG_box_dom (IPR009071) - T[1-68] 5.2E-12 - T[84-154] 1.4E-23 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[1-67] 4.45E-19 - T[72-155] 1.06E-26 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[1-67] 15.726 - T[85-153] 19.558 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[1-68] 1.2E-25 - T[69-168] 2.6E-29 |
| Pfam |
HMG_box_dom (IPR009071) - T[2-66] 1.3E-16 - T[85-153] 3.2E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 55.952 % | 176 | 2.76E-56 |
| HMGB2_HUMAN | 54.598 % | 168 | 4.73E-53 |
| HGB1A_HUMAN | 52.381 % | 162 | 8.15E-51 |