- Clone 'AHC0AAA223YB18' >
- Transcript 'Phfumi.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S5304.g06856.01.t
Possible name(s)
PCDH18; PCDH19; PCDHGB3
Gene model
Location
S5304 [1,741 / 9,779]
Amino acid sequence
Length: 1,153
>Phfumi.CG.MTP2014.S5304.g06856.01.p
VTSCLLTSSCVLSAARKTVHLPEESKIGHHIGNVAEILRIIPAPKSQYQLLQENLITTEI
KAVQQRRKWIGVDVRTGAITLRHRVDREKLCGESTTCIIRLQIFVSGEQKMLDLDVIVDD
VNDNDPIFPIRSIEVNISETASLGEYINLDRFLAKDKDLGNNSAITYSINQNGYFDVEQV
TDDMGSQSLRLKVINQLDFETMSFQRLELTAEDGGIPKRRSHVPLRVKIVDENDNRPIFD
KTEYSVQLNENIPSGYVMTRVRAHDADAGPWGTVRYSVSTRNKALARHLVEVDAKTGDVT
LNQKLDREKHDGIRIAVEARDMSSTNHRMGITWIVIHVRDSNDNAPEIMVSLIPPGQGTT
AYISEDAPAESAFAYVTATDADLGRNADVTIKIQSVVPFGGGDDIEVDMKNRFQLDSAGL
LGIAERLDREDKDRYKIVLRACDNGFPKLCSNTSLDLVVLDVNDNTPIFPEPEMTLTLDE
DTAVGEFVTTLQAVDGDSQNSPSXFPNPYGEVVSSSNGDVVYSIVHSDGTFSIEPHTGRL
TLVRPLDREQIDLLTLTVEARDGGYPKILSSSCKLTVKINDVNDNYPLFTYPPEDNMTVY
ATIIRDDVILRIQASDYDLGASGEVDFSIASVGGAAEFGTPVFILDSNTGDLRLNMTLPD
LRNVLGPHFVTIVARDHGPTSLSSIRHINVKVTDLDVLPTLAPPQRVATSSSIIIIIAFA
SSVVLITLVVVIVLIRRCRALKKQTRTYACHKVSQEDQEWGRASVSSLKHKPIEARRAVS
KDTDMGETSRLWEDGNKAKTDSFVTVSNTDVTSSRNDVMMTRHLRNSTRSLGRGFSQNSN
NRPNFPEKYQSVPHLLTSSSHDGDSGRGDSDPDVASCDATYDHDISRLRSNSSHLSARSD
ASDRSSNQLSRRCTDSCLKYGHSDACWMPPSPYVEPPAYIDNPNSMYVQLCPLPQNHCPH
PDQQRQIDLEPIPEASPIRYFTGYPASDLSSIYSNVINANRGHPQHGYYSPMRPIIEASP
RVTSFDHQTPTSSRLSPISSVSSPPASSLHADDNAQRKTHCIIRRDVAPDDVGATSPGSA
PASPSRPSNLLTRSYSADLLASERPGNVGSAPPRIEVRSPTVSEQNFRSNAYGQVSMRET
EEIVQNIEKLLST
Nucleotide sequence
Length: 3,462
>Phfumi.CG.MTP2014.S5304.g06856.01.t
GTGACGTCATGTCTTCTGACGTCATCATGTGTCTTGTCAGCTGCGCGAAAAACAGTGCAT
CTACCGGAAGAATCGAAAATCGGACACCACATTGGAAATGTCGCTGAAATTCTTCGCATT
ATCCCTGCACCAAAATCCCAATATCAGCTTTTGCAAGAAAACCTGATAACGACAGAGATT
AAAGCTGTGCAACAGCGCCGCAAGTGGATCGGTGTCGACGTACGGACAGGCGCGATCACG
TTGCGCCATCGCGTGGACAGGGAGAAGCTCTGTGGTGAATCAACGACCTGTATTATACGC
CTACAGATTTTTGTTAGTGGTGAACAGAAAATGTTGGACCTTGACGTAATAGTTGATGAC
GTGAACGACAACGATCCAATTTTCCCAATAAGGTCAATTGAAGTCAACATTTCAGAAACT
GCTTCATTGGGCGAATATATCAACCTGGACCGATTCCTCGCCAAGGACAAAGATCTAGGT
AATAACTCCGCAATCACTTACTCTATAAACCAAAATGGATATTTCGACGTTGAACAAGTA
ACTGACGATATGGGATCGCAAAGTTTGCGTCTAAAAGTCATCAACCAATTGGATTTCGAG
ACGATGTCCTTCCAGCGACTAGAACTTACAGCCGAAGACGGGGGGATCCCCAAACGCAGG
AGTCACGTGCCGCTACGTGTGAAAATCGTTGATGAAAACGACAACCGGCCGATTTTCGAT
AAAACGGAATATTCGGTTCAACTGAACGAAAACATTCCTTCCGGTTATGTCATGACGAGA
GTTCGAGCTCACGACGCAGATGCAGGACCCTGGGGAACGGTCCGATACTCGGTTTCCACT
CGAAACAAGGCACTCGCTCGACACCTGGTGGAAGTTGATGCAAAAACCGGTGACGTCACA
CTCAATCAAAAACTTGACCGCGAAAAGCACGATGGGATTCGAATCGCGGTGGAAGCACGT
GACATGAGCTCGACCAATCACCGCATGGGAATTACGTGGATTGTGATACACGTGCGGGAT
AGCAATGATAACGCACCGGAGATAATGGTCTCCCTTATACCTCCAGGACAAGGAACTACA
GCATACATTAGCGAAGACGCTCCTGCTGAGTCAGCTTTTGCATACGTCACTGCAACCGAC
GCCGATTTGGGACGCAATGCTGACGTCACCATCAAAATTCAATCTGTGGTGCCCTTCGGC
GGCGGGGATGACATTGAAGTTGACATGAAAAATCGATTCCAACTTGACTCTGCAGGACTT
CTTGGTATCGCGGAAAGATTGGATAGAGAGGATAAAGACAGATATAAAATTGTTTTGCGG
GCCTGCGACAATGGATTTCCTAAGCTCTGTTCAAACACTAGTCTAGACCTTGTGGTTCTT
GATGTCAACGACAACACGCCAATATTTCCCGAACCCGAAATGACTTTAACTTTGGACGAG
GACACGGCAGTGGGAGAATTTGTTACAACTCTTCAAGCGGTCGACGGCGACTCGCAGAAC
AGCCCATCTCTNTTCCCGAACCCGTACGGAGAAGTGGTGTCGTCATCAAACGGTGACGTC
GTATACTCGATTGTGCACAGTGACGGAACATTCTCGATCGAACCACATACCGGAAGGCTG
ACTCTAGTGCGCCCCCTAGACAGAGAACAGATTGACTTGTTAACATTGACTGTGGAAGCC
AGAGACGGCGGTTATCCTAAGATTCTCTCCAGTTCCTGCAAACTAACTGTAAAGATCAAC
GACGTGAACGACAATTACCCACTATTCACGTATCCGCCGGAGGACAACATGACGGTTTAC
GCAACCATCATTCGAGATGACGTCATACTACGTATACAGGCTTCTGACTATGATTTGGGC
GCAAGTGGTGAAGTTGACTTCTCTATCGCATCCGTTGGTGGCGCTGCTGAGTTTGGCACA
CCAGTTTTCATTCTCGATTCAAACACGGGCGACCTTCGCCTTAATATGACCTTGCCTGAC
CTTAGGAACGTGCTAGGCCCACACTTTGTCACAATTGTGGCACGTGACCACGGACCAACG
TCACTGAGCAGCATACGTCATATTAACGTCAAAGTTACCGATCTCGATGTTCTTCCAACC
TTGGCCCCTCCCCAACGAGTTGCTACGTCATCAAGCATCATAATAATCATCGCGTTTGCG
TCATCAGTCGTTCTTATAACCTTAGTTGTGGTGATTGTCCTTATCCGGAGATGCAGAGCT
TTGAAAAAACAAACTCGCACTTATGCGTGCCACAAGGTGTCGCAAGAGGACCAGGAGTGG
GGTCGCGCGTCAGTGAGCAGTCTTAAACACAAACCAATCGAAGCGAGAAGAGCTGTTTCC
AAGGATACCGACATGGGAGAAACGAGTAGATTGTGGGAGGATGGCAATAAAGCAAAAACC
GACTCGTTTGTGACCGTTTCCAACACTGACGTCACCTCATCGCGCAATGACGTAATGATG
ACGCGTCACCTGCGTAACTCAACCCGAAGTCTCGGTAGAGGGTTTTCCCAGAACAGCAAC
AACCGACCAAATTTTCCGGAAAAATACCAGTCGGTTCCTCATCTTCTGACATCTTCTTCA
CACGATGGCGATAGTGGGCGGGGGGATAGTGACCCGGATGTTGCAAGCTGTGACGCCACA
TATGACCATGACATTTCGCGCCTTCGTTCAAATTCATCCCATTTGAGTGCAAGAAGTGAC
GCGTCGGATCGATCGAGCAATCAGCTTTCAAGACGATGCACAGATTCATGTTTGAAATAT
GGACATAGCGATGCGTGTTGGATGCCACCAAGCCCTTACGTTGAACCGCCAGCGTATATC
GACAACCCGAATTCGATGTATGTGCAACTTTGTCCGCTACCGCAGAATCACTGCCCGCAT
CCGGACCAACAGCGTCAGATTGACCTTGAACCAATTCCAGAAGCTTCTCCGATTCGGTAC
TTCACCGGCTACCCCGCCTCAGATCTGAGTTCCATTTACTCAAATGTTATAAACGCCAAT
CGGGGGCATCCCCAACATGGATACTACTCCCCGATGCGACCAATCATCGAGGCGTCACCC
CGTGTGACGTCATTCGATCATCAGACGCCTACGTCATCGAGATTAAGTCCCATTTCGAGT
GTTTCGTCACCACCCGCGTCATCACTGCACGCCGATGACAATGCGCAACGTAAAACCCAT
TGCATAATACGGCGTGACGTAGCGCCCGATGACGTCGGTGCTACGTCACCGGGGTCGGCA
CCGGCCTCGCCAAGCCGGCCTTCGAATTTGCTCACAAGAAGTTATTCGGCCGATTTGCTG
GCGAGTGAAAGGCCGGGAAATGTGGGATCGGCTCCCCCGAGAATCGAAGTTCGATCTCCG
ACAGTCAGCGAGCAGAATTTTCGATCGAACGCGTACGGACAAGTCAGCATGCGCGAAACC
GAAGAGATTGTCCAGAACATTGAAAAGCTCTTGAGCACGTAG
| Pfam |
Cadherin_N (IPR013164) - T[21-105] 4.8E-10 |
| SMART |
Cadherin (IPR002126) - T[34-126] 0.31 - T[152-237] 4.8E-18 - T[261-346] 1.7E-16 - T[376-467] 8.8E-17 - T[508-587] 2.8E-20 - T[612-700] 1.4E-5 |
| PRINTS |
Cadherin (IPR002126) - T[68-87] 1.3E-30 - T[239-268] 1.3E-30 - T[434-446] 1.3E-30 - T[448-467] 1.3E-30 - T[467-480] 1.3E-30 - T[536-562] 1.3E-30 - T[571-588] 1.3E-30 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[121-231] 1.36E-16 - T[227-351] 1.57E-23 - T[342-462] 2.14E-15 - T[458-592] 1.57E-24 - T[582-694] 2.14E-13 |
| Pfam |
Cadherin (IPR002126) - T[135-229] 2.0E-9 - T[244-338] 3.8E-14 - T[360-459] 4.4E-9 - T[516-579] 3.4E-12 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[227-237] . - T[457-467] . - T[577-587] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 28.836 % | 326 | 3.95E-94 |
| PCD19_HUMAN | 31.367 % | 283 | 2.28E-79 |
| PCDGF_HUMAN | 30 % | 278 | 1.29E-78 |