- Clone 'cima820628' >
- Transcript 'KH2012:KH.C2.471.v2....' >
- Transcript 'KH2012:KH.L3.1.v5.C....' >
- Transcript 'Phfumi.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S5564.g07003.01.t
Possible name(s)
LEMD3; RBM23; RBM39
Gene model
Location
S5564 [864 / 2,274]
Amino acid sequence
Length: 469
>Phfumi.CG.MTP2014.S5564.g07003.01.p
MADDIDVEAMLEAPFQKESSMSKEKDRKKSDRKSRKRSRSRSRSKSHRHRRSRSRSKERH
RRRRSRSHERRRKRSRSPRHRSPRKKEKTPTPPPKPRSPSPPDRDARTIFCFQLAQRIRS
RDLEEFFSSVGKVREVKLIQDKHSKRSKGIAYVEFKDLESVPLALGLSGQKVLGVPIVVQ
PTQSEKNKVAAAQMTLQQAARGPTRLYVGSLHENITEEMLKGIFSPFGRIEQVQIVKDQD
TGVSKGYAFITFAEADCAKRALDQLNGFEIAGKPIKLNTVGSAMDLTALSAFAGGPSFLD
NDAVERAGIDLGTTGRLQLMAKLAEGTGLEVPTAAQHALQLGQSMGLGLPQAQSATNTSP
PIATTCFQLSNMFDPQNESGSDWDKEIANDVIEECSRHGQVFHCFVDRESKGNVYIKCDT
TEAASKSVNALHGRYFAGNMITAAYVPLINYHSLFPDAAYAKTAIKPNR
Nucleotide sequence
Length: 1,410
>Phfumi.CG.MTP2014.S5564.g07003.01.t
ATGGCGGATGACATTGATGTAGAAGCTATGCTTGAGGCTCCATTCCAAAAAGAAAGCTCC
ATGAGCAAAGAAAAAGATAGAAAGAAAAGTGATCGTAAATCGCGAAAGCGCAGTCGCAGC
AGAAGCCGCAGCAAGAGCCATCGTCACAGAAGGTCAAGATCCAGAAGTAAGGAAAGGCAT
CGTCGTAGGCGAAGTAGATCGCATGAACGCAGGCGCAAAAGAAGCAGGTCTCCACGACAT
AGAAGCCCACGAAAGAAGGAAAAGACCCCCACTCCCCCACCAAAACCCAGGTCACCAAGT
CCACCAGATCGTGATGCAAGAACTATTTTTTGTTTCCAGTTGGCCCAGCGAATTAGGTCC
AGAGATCTTGAGGAGTTTTTCTCCTCTGTTGGAAAAGTGCGTGAGGTGAAGCTTATCCAA
GACAAGCATTCAAAACGCTCAAAGGGTATTGCATATGTGGAGTTCAAGGACCTGGAATCT
GTGCCTTTGGCTTTGGGTTTGAGTGGGCAAAAGGTTCTTGGTGTCCCCATTGTGGTACAG
CCCACACAGTCTGAAAAGAATAAGGTGGCTGCAGCTCAAATGACATTACAACAAGCCGCC
CGAGGACCAACACGTCTTTACGTAGGATCCCTTCACGAAAATATCACAGAGGAAATGTTG
AAAGGAATCTTTTCGCCATTTGGCCGCATCGAGCAGGTTCAAATCGTCAAGGATCAGGAT
ACGGGTGTGTCGAAGGGTTATGCTTTTATCACCTTTGCAGAGGCGGATTGCGCAAAGCGT
GCCCTCGACCAGCTGAATGGATTTGAAATTGCCGGAAAACCGATTAAGCTTAATACTGTT
GGCAGCGCGATGGACTTGACCGCGCTGTCAGCGTTTGCTGGTGGCCCTTCGTTTCTGGAT
AATGACGCTGTAGAGAGAGCAGGCATCGATCTTGGAACAACCGGACGGCTGCAACTAATG
GCGAAGCTGGCGGAAGGCACAGGCTTGGAAGTTCCGACTGCTGCACAACACGCTTTGCAA
TTGGGTCAGTCTATGGGTCTTGGTCTGCCACAGGCACAAAGTGCCACCAACACTTCTCCT
CCGATCGCCACCACATGCTTCCAGCTGTCAAATATGTTTGATCCACAGAATGAGAGCGGC
AGCGACTGGGATAAGGAAATTGCAAACGACGTGATTGAGGAGTGCTCACGTCATGGTCAG
GTCTTTCATTGTTTTGTTGACAGGGAATCGAAGGGAAATGTCTACATCAAATGCGACACC
ACTGAGGCTGCAAGCAAGTCTGTGAATGCGTTGCATGGTCGCTATTTTGCAGGCAACATG
ATTACGGCAGCCTATGTCCCATTGATCAACTATCACTCGCTGTTTCCGGATGCAGCCTAC
GCCAAGACGGCCATTAAGCCCAACCGATGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-190] 8.6E-23 - T[191-283] 2.5E-27 - T[359-469] 1.0E-30 |
| TIGRFAM |
RBM39_SF (IPR006509) - T[19-351] 4.2E-106 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[31-181] 2.15E-22 - T[195-278] 4.84E-28 - T[360-447] 3.49E-16 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[107-184] 14.931 - T[204-282] 19.979 |
| SMART |
RRM_dom (IPR000504) - T[108-180] 1.7E-15 - T[205-278] 1.3E-28 - T[366-444] 0.69 |
| Pfam |
RRM_dom (IPR000504) - T[109-174] 4.7E-12 - T[206-276] 1.0E-22 |
| Pfam |
RBM39_linker (IPR029123) - T[302-383] 4.0E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MAN1_HUMAN | 39.823 % | 98.2 | 1.01E-21 |
| RBM39_HUMAN | 52.425 % | 487 | 2.37E-169 |
| RBM23_HUMAN | 43.919 % | 323 | 1.02E-106 |