- Transcript 'Phfumi.CG.MTP2014.S5...' >
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- Transcript 'Phfumi.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S55.g00692.02.t
Possible name(s)
LAMA1; LAMA2; LAMA3
Gene model
Location
S55 [30,470 / 43,521]
Amino acid sequence
Length: 1,958
>Phfumi.CG.MTP2014.S55.g00692.02.p
IFTQTLMYASKTMSTEYTKQTSTNQSVIHTQSGHLRILTKDRNELFVSSSIHRENMKSLA
RNGRGLFGKTLIRRRGRISSGQILTIARDLCPCGVRELNNTNQYYYSIKDISIGGMCICY
GHASTCPTDPRTGIFRCACEHNTVGPNCEQCLPGFQQYKWRPGNDGFQCEVCNCHGHSED
CFYDEGVAERRESLNQLGEYLGGGVCVGCRDNTEGINCQTCIDGYYRPYAAEADDANPCV
RCDCDPYGGRRVPARTGPYVCVKDITFIDTENDLYPGSCYCNEGFTGSRCDRCAFGYRGF
PRCDPCPCNVAGSRNADPCVGECVCKANVEGEGCSQCKTGYFNMQRQNPNGCERCYCSGV
TLNCASADLRWSTIHTNHNWEVRDRRNRRRATPQFDYDLNEPYVEHGQTARDLGTAMYYW
AAPVQYLGERLSSYGGTMRYTVSYDILQGSQALPIQDADVILEGNGRSLIYNYMGSLVYP
QEETEVSIKLEANKDGDVSGWVDSNSLLPASKEEIMIVLQHVTRLYIRAVYSRNAGAVYR
IRDVYMQTATESGEGAAAHSVEKCRCPPGYTGFSCENCAVGYWRSGRMCLPCQCNGHSDS
CNPLNGACENCQHNTMGMHCERCKPGFYGDSTTGTPEDCQMCSCPLPIASNNFSPLCYLD
RTTSEMVCLKCPTGYAGKRCETCEQGYFGDPTTPGGSCRLCECNGNSQSCDSLTGVCTYC
RGHTSGDHCEVCESAYYGDAIERKNCGPCECNAAGSVSRQCHLVTGQCSCRPGVYGRKCD
ACESDHYLSAEERMCVACECDATGSLSGQCGGDGSCVCREGVEGRRCDSCARGFFAFSEL
GCIECNCQHTNGNCDSQTGECVCPENTHGVGCSQCAENAFGIGSVNGCELCNCSDVGSLF
TNTCDNSTGQCSCKPGYDGRQCNTCKRGLYGYPNCRPCRCNKIGTVANDCGDSANSSCNC
RNDGQCHCKANVVGKQCDQCGEGYFGLSESNPLGCSECFCFGAADHCIAAEGYSWGTPIA
LNSAPVEVLNPSSMANRVQGLVATRDAEVQDKSVVIRDIHSQPYYWRLPSQFNGDKLLSY
GGQLRYRIYYVSQISFEDEEIGKPSVVLRGGRGTKKTIQYQLENPQTDQSRDYVVPMQEI
GWTHLDTKRPVTRAEFATVLSDIEFFLIKATYGRLMGQSRLSNVFLDIAQPRMQGRGDAA
SSYPPALSIEQCFCYPGYTGSSCQNCDSGYMRIQQGSNYGRCEPCNCNNRSSTCDIMTGV
CLNCQDKFIGVHCEMCSPGYYLSGNECRKCACPGPAASQNFSPTCHPDGADGITEYTCDA
CKTGYEGKHCERCSDGYYGNPTRPGGFCAKCGCNVAGSLDAVCDKVTGQCRCDAGISGRI
CDQCMPRHIITHFGCQECNDGCSSKLLQDIETLTHRASRVQIHTMFPPPWDRLVAARNLT
QQLQKRVDNETDEILSRLAVIVSVPDRIRITKQNISSLQPQANECKNSGEITASDVKQTR
KRLKAQRTTTRYLSNVIEGFSRTLSRFVHQLQNGTTEEIIGMDDKLEGWVESMRQLSFSN
LQRIANEELESSAVFLDMVAANFSAQYLSRMDSVRTEHSEMLINLTGAREIFVEFRYLLD
NITSEIAVTNTMNELNLQTLRQTKSKIERVNNKATIVDVSLTNSESQVENTRILIQNGSA
AMANLDVVFNGLVNELPPFTKVRDKLMGGVDAAVRHFKNAGRHVTSLQSDVEYIKSVHRN
ITEFSYNQTEAATRWTQIANKFDFTDQRADAAVSLSMDALNSITTDLGKRSKVSLQRSKD
INDAVTSMENNLNGDRRLLRNQNEALRSENQTVADLAKQHERILTRLKDTRRQSKTTMKR
VQRAVSQATKTLDSIKKSLHVAETNLRKLRKTEMDVSQRSFVINETTNIMATVPVSIDRA
IEASNRASLTAKRVKLRSDSMRSNITFIRKLIEDTKAK
Nucleotide sequence
Length: 5,874
>Phfumi.CG.MTP2014.S55.g00692.02.t
ATCTTTACACAAACATTGATGTATGCATCCAAAACAATGTCGACGGAATATACAAAACAA
ACATCTACGAATCAAAGTGTCATACACACTCAGAGTGGACATTTACGCATTTTGACGAAA
GATCGTAATGAACTCTTTGTAAGTTCGAGTATACATCGGGAAAATATGAAGAGCTTGGCC
AGAAATGGAAGGGGTTTGTTTGGCAAAACACTAATTCGGCGCCGAGGTCGAATTTCTTCA
GGACAGATACTGACGATAGCCCGCGATCTTTGTCCGTGCGGCGTCAGGGAGTTGAACAAC
ACCAATCAGTATTACTACTCGATCAAAGACATCAGTATTGGAGGGATGTGTATTTGTTAC
GGCCACGCCAGTACTTGTCCAACAGATCCACGAACAGGGATTTTTAGATGTGCCTGTGAA
CACAACACTGTGGGCCCGAACTGTGAACAATGCCTTCCCGGCTTTCAACAATACAAGTGG
AGGCCAGGCAACGACGGATTTCAGTGTGAAGTGTGCAACTGCCACGGGCACTCAGAAGAT
TGTTTCTACGACGAAGGAGTCGCTGAACGGAGAGAAAGCCTCAACCAACTTGGAGAATAC
CTCGGAGGGGGCGTGTGTGTCGGTTGCAGGGACAATACAGAGGGTATCAATTGTCAAACT
TGCATCGATGGTTATTACCGCCCTTATGCAGCGGAGGCCGACGACGCCAATCCCTGTGTT
CGTTGCGACTGTGATCCTTATGGTGGCCGAAGAGTGCCAGCTCGCACAGGGCCATACGTG
TGCGTCAAAGATATTACGTTTATCGACACCGAAAACGACCTTTATCCAGGGTCATGTTAC
TGCAATGAGGGTTTCACCGGAAGCAGATGCGACAGGTGCGCATTTGGATATCGTGGATTC
CCACGTTGTGATCCCTGTCCTTGCAACGTCGCTGGAAGCCGCAACGCAGACCCTTGTGTG
GGCGAATGTGTGTGTAAGGCCAACGTTGAGGGCGAAGGTTGTTCTCAGTGCAAGACAGGC
TACTTCAACATGCAACGTCAGAACCCAAACGGCTGCGAGCGGTGTTACTGCAGCGGTGTC
ACGCTGAATTGCGCCTCGGCAGATCTAAGATGGTCTACAATACACACCAACCACAACTGG
GAAGTGCGGGACAGACGAAACCGACGTCGAGCGACGCCTCAGTTTGATTACGATCTCAAT
GAGCCTTACGTGGAGCACGGACAAACGGCACGTGATCTCGGAACTGCCATGTACTACTGG
GCAGCGCCCGTGCAATATTTAGGTGAGCGTCTGTCGTCGTACGGTGGGACGATGCGCTAC
ACTGTGTCGTACGATATCCTGCAAGGTTCACAGGCGTTGCCAATCCAGGATGCCGACGTT
ATACTGGAGGGCAACGGAAGGTCATTGATATACAACTACATGGGGAGTTTGGTTTATCCG
CAAGAAGAAACCGAAGTGTCAATCAAACTTGAAGCTAATAAAGACGGTGATGTGTCTGGT
TGGGTGGATTCCAATTCCCTGCTACCAGCTTCCAAGGAGGAAATTATGATAGTACTTCAG
CACGTGACACGCCTTTACATCAGAGCAGTTTACAGCAGAAATGCCGGGGCGGTATACAGA
ATACGAGATGTGTACATGCAAACAGCGACGGAAAGCGGGGAAGGAGCGGCGGCACACTCG
GTGGAGAAGTGTCGTTGCCCTCCAGGTTACACCGGTTTCTCCTGTGAGAACTGTGCAGTG
GGCTACTGGAGGAGCGGAAGGATGTGTCTCCCCTGCCAATGTAACGGACATTCAGATTCC
TGTAACCCGCTGAATGGTGCCTGTGAGAATTGTCAACACAACACCATGGGAATGCACTGC
GAACGATGCAAACCTGGTTTCTATGGTGATTCAACCACAGGAACCCCAGAAGATTGTCAA
ATGTGTTCCTGTCCACTTCCAATCGCAAGCAACAACTTTAGCCCACTCTGCTACTTAGAC
CGCACCACGTCAGAAATGGTTTGCCTAAAATGCCCAACAGGTTATGCCGGAAAGAGATGC
GAAACATGCGAGCAAGGTTATTTCGGTGATCCGACCACACCAGGTGGATCATGTCGACTA
TGTGAATGCAATGGCAACTCGCAGTCGTGTGACTCGCTCACCGGGGTTTGCACTTACTGC
AGGGGGCACACGTCAGGGGACCACTGCGAAGTCTGTGAATCAGCGTACTACGGGGACGCG
ATCGAACGAAAGAACTGCGGACCGTGCGAATGCAACGCGGCGGGGTCGGTGAGCCGTCAA
TGCCATCTCGTCACGGGTCAGTGCTCGTGCAGGCCCGGTGTTTACGGGAGGAAGTGTGAC
GCGTGTGAGAGCGACCATTACCTCAGTGCAGAGGAACGCATGTGCGTGGCGTGTGAATGC
GACGCCACCGGGAGTCTTTCGGGGCAGTGCGGTGGTGACGGATCCTGCGTTTGCCGTGAG
GGCGTAGAGGGACGGCGCTGCGATTCGTGTGCACGCGGATTCTTTGCATTCAGCGAACTT
GGCTGCATAGAATGTAACTGTCAGCACACCAATGGAAACTGTGATTCACAAACTGGGGAA
TGCGTCTGTCCTGAAAACACACACGGAGTCGGATGTAGCCAGTGCGCGGAGAATGCGTTT
GGCATAGGAAGCGTAAATGGATGCGAGCTGTGTAACTGCAGTGACGTTGGCTCCCTTTTT
ACAAACACCTGCGACAACTCGACCGGCCAATGTTCGTGCAAACCCGGGTACGACGGCCGA
CAATGCAATACCTGCAAACGTGGACTCTACGGTTATCCCAACTGCAGACCGTGCAGATGC
AACAAAATAGGCACTGTTGCGAACGATTGCGGCGATTCAGCAAACAGCTCGTGTAACTGC
AGAAACGACGGCCAATGTCATTGCAAGGCAAATGTGGTTGGAAAACAGTGTGATCAATGC
GGCGAAGGATACTTCGGCCTCAGCGAAAGCAACCCACTGGGTTGCAGCGAGTGTTTCTGT
TTCGGAGCTGCTGATCACTGCATCGCTGCTGAGGGATATTCCTGGGGGACTCCGATTGCA
CTTAATTCGGCGCCAGTAGAGGTTCTGAACCCATCCAGCATGGCAAACAGAGTTCAAGGC
CTCGTTGCTACTAGAGATGCTGAGGTGCAAGATAAAAGTGTTGTGATACGGGACATACAC
AGTCAACCATATTACTGGCGTCTACCGTCACAGTTTAACGGAGATAAGTTGCTTTCCTAC
GGAGGCCAATTAAGGTATAGAATATACTATGTGTCCCAAATATCGTTTGAAGATGAAGAA
ATCGGAAAGCCCAGTGTGGTTTTAAGAGGGGGTAGAGGAACCAAGAAAACCATACAGTAT
CAGTTGGAAAACCCTCAAACCGACCAGAGCAGAGACTATGTCGTCCCAATGCAGGAGATT
GGATGGACGCACTTAGACACCAAGAGACCCGTGACTCGAGCCGAATTCGCAACAGTACTT
AGTGACATCGAGTTTTTTCTTATTAAAGCAACGTACGGCCGCTTGATGGGGCAATCGAGA
TTGAGCAATGTTTTTCTCGACATTGCCCAACCCAGGATGCAAGGACGTGGCGATGCAGCT
TCAAGTTATCCACCGGCTCTAAGTATTGAGCAATGCTTCTGTTACCCCGGCTATACAGGT
TCCTCTTGCCAGAACTGCGACAGCGGATATATGAGAATCCAACAGGGGTCAAATTATGGA
CGTTGTGAACCTTGCAACTGTAACAACCGTAGCAGCACTTGCGATATTATGACTGGCGTT
TGTTTGAACTGCCAAGACAAGTTCATTGGGGTTCATTGCGAAATGTGCTCGCCGGGATAC
TATCTCTCAGGTAATGAATGCAGAAAATGTGCTTGCCCGGGTCCAGCTGCCTCTCAAAAT
TTCAGTCCAACTTGCCACCCCGATGGTGCTGATGGAATCACTGAATACACGTGCGATGCA
TGTAAAACCGGATACGAAGGAAAACATTGTGAAAGGTGCTCGGATGGGTACTACGGAAAT
CCTACCAGGCCTGGCGGTTTTTGTGCCAAGTGCGGGTGCAACGTCGCTGGGTCACTAGAC
GCCGTTTGCGACAAGGTGACGGGGCAGTGCCGATGCGATGCTGGTATCTCAGGTCGAATA
TGCGACCAATGTATGCCGAGACACATTATCACCCATTTCGGGTGTCAAGAATGCAATGAT
GGTTGTTCCAGCAAACTGCTGCAGGATATCGAAACTCTGACACACAGGGCATCAAGGGTC
CAAATTCACACAATGTTTCCGCCACCCTGGGATCGACTCGTCGCAGCTCGCAATCTTACA
CAACAGCTTCAGAAACGCGTTGACAACGAAACGGATGAAATCTTGAGTCGTCTGGCTGTG
ATAGTGTCAGTTCCCGACAGGATCAGAATCACCAAACAAAACATATCGTCACTTCAACCA
CAAGCTAACGAATGCAAAAACAGTGGTGAAATCACTGCATCTGATGTTAAACAGACCCGA
AAAAGACTAAAGGCACAAAGGACCACTACCCGATACTTGTCCAACGTGATAGAAGGATTT
TCCCGTACACTCTCCCGCTTTGTACATCAATTGCAAAACGGAACCACTGAAGAGATAATT
GGGATGGACGACAAGCTTGAAGGATGGGTTGAGTCTATGCGCCAGTTGAGTTTTTCCAAT
CTGCAAAGAATAGCGAATGAGGAACTTGAGTCCTCGGCTGTCTTCCTGGATATGGTTGCG
GCAAACTTTTCTGCACAATACTTGTCGAGGATGGACTCCGTTCGCACTGAGCACAGTGAA
ATGTTGATCAACCTTACAGGCGCTAGGGAAATCTTTGTCGAATTTCGGTACCTTTTGGAT
AATATTACATCGGAAATCGCTGTAACAAATACAATGAATGAATTAAACCTTCAAACTCTC
AGACAGACAAAAAGCAAAATAGAGAGGGTGAACAACAAGGCGACCATCGTTGATGTTAGT
CTAACCAACTCAGAATCCCAAGTGGAAAATACTCGGATACTGATACAGAATGGGAGTGCA
GCGATGGCCAATTTGGATGTTGTTTTTAATGGACTAGTGAATGAATTGCCTCCATTCACC
AAAGTGCGAGACAAATTAATGGGTGGCGTCGATGCAGCTGTGCGTCATTTCAAAAACGCG
GGACGGCATGTGACTAGTTTGCAATCGGATGTCGAATACATTAAAAGTGTACATCGCAAC
ATAACGGAATTCTCGTACAACCAAACTGAGGCCGCTACCCGCTGGACGCAGATTGCGAAC
AAATTTGATTTTACCGACCAAAGAGCCGATGCCGCGGTGTCTTTATCCATGGATGCGCTC
AACTCGATCACGACGGATCTTGGCAAAAGGTCGAAGGTGTCATTGCAGAGAAGCAAAGAT
ATTAATGACGCGGTGACATCAATGGAAAACAACCTGAACGGCGATCGCAGGTTACTCCGC
AATCAGAACGAGGCTTTAAGGTCTGAAAACCAAACCGTCGCGGATCTTGCTAAACAACAC
GAACGAATTCTAACCCGTTTGAAAGACACCCGAAGACAATCTAAAACAACCATGAAACGA
GTCCAACGCGCTGTCAGTCAAGCTACGAAAACCCTGGACAGTATTAAAAAGAGCTTGCAT
GTTGCCGAGACCAATTTGAGAAAGCTGCGCAAAACCGAAATGGACGTTTCACAACGCTCG
TTCGTCATAAACGAGACCACAAACATCATGGCCACTGTTCCAGTATCCATTGATCGAGCA
ATCGAAGCATCAAACCGGGCGAGTTTGACGGCGAAACGTGTCAAACTCCGCAGCGACAGC
ATGCGGTCAAATATCACATTTATCCGAAAATTGATTGAGGATACCAAAGCAAAA
| Gene3D |
Laminin_N_sf (IPR038684) - T[2-140] 6.2E-13 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[117-171] 12.597 - T[172-241] 11.017 - T[242-305] 10.712 - T[306-354] 13.435 - T[592-641] 19.509 - T[642-700] 9.588 - T[701-748] 13.968 - T[749-797] 16.386 - T[798-844] 16.405 - T[845-890] 9.417 - T[891-937] 19.528 - T[938-997] 15.301 - T[1245-1289] 12.216 - T[1290-1350] 12.711 - T[1351-1404] 12.635 |
| SMART |
Laminin_EGF (IPR002049) - T[117-169] 4.3E-4 - T[172-239] 8.7E-7 - T[242-303] 4.3E-5 - T[306-352] 0.0027 - T[592-639] 2.4E-14 - T[642-698] 1.5E-6 - T[701-746] 4.4E-7 - T[749-795] 7.2E-10 - T[798-842] 3.9E-8 - T[845-888] 0.0016 - T[891-935] 2.6E-9 - T[938-995] 1.0E-8 - T[1245-1287] 6.7E-11 - T[1290-1348] 1.3E-6 - T[1351-1395] 5.7E-7 |
| Pfam |
Laminin_EGF (IPR002049) - T[117-163] 1.2E-4 - T[172-228] 0.0014 - T[242-302] 1.7E-4 - T[306-352] 8.2E-6 - T[563-585] 0.0047 - T[592-639] 4.9E-10 - T[642-698] 3.5E-6 - T[701-746] 1.0E-6 - T[749-791] 4.4E-10 - T[798-838] 2.4E-7 - T[845-888] 2.1E-4 - T[891-940] 4.1E-9 - T[1211-1237] 0.0062 - T[1245-1283] 2.4E-7 - T[1290-1348] 1.4E-7 - T[1351-1391] 8.3E-6 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[137-148] . |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[137-169] . - T[323-357] . - T[608-644] . - T[911-940] . - T[966-1000] . - T[1318-1353] . |
| SMART |
EGF-like_dom (IPR000742) - T[238-291] 68.0 - T[591-640] 77.0 - T[656-699] 240.0 - T[799-843] 50.0 - T[874-926] 140.0 - T[949-996] 95.0 - T[1253-1288] 27.0 - T[1289-1331] 27.0 - T[1347-1382] 230.0 |
| ProSiteProfiles |
Laminin_IV (IPR000034) - T[375-563] 33.692 - T[1010-1211] 33.187 |
| SMART |
Laminin_IV (IPR000034) - T[414-551] 2.5E-26 - T[1060-1191] 4.4E-36 |
| Pfam |
Laminin_IV (IPR000034) - T[419-562] 6.5E-31 - T[1065-1199] 8.1E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMA1_HUMAN | 36.252 % | 1163 | 0 |
| LAMA2_HUMAN | 36.495 % | 1219 | 0 |
| LAMC1_HUMAN | 35.194 % | 422 | 1.39E-121 |