- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C7.656.v1....' >
- Clone 'cima878569' >
- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Phfumi.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S63.g00766.02.t
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
S63 [74,149 / 80,076]
Amino acid sequence
Length: 1,259
>Phfumi.CG.MTP2014.S63.g00766.02.p
MAQLTESNIDLRQVRRVQFGILSPDEVKRMSVTEGGVQYPEVTEGGRPKLLGLMDPRQGV
VDRMSRCQTCAGNMTDCPGHFGHIELAKPVFHVGFLTKSIKLLRCVCFYCSRLLVEKGNP
KIRQVMSKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGCGR
YQPKIRRQGMELIAEWKHVNEDSQEKKITVSAERVHEIFKRISDEESEILGMDPRFARPE
WMICTVLPVPPLCVRPSVVMGGGSARSQDDLTHKLADIIKANQQLKRNEQNGTAAHIIME
DVKLLQYHVATLTDNEMPGVPRALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSART
VITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAKYIIRDSGD
RIDLRYHPKLSDLHLQVGYKVERHLKEGDVIVFNRQPTLHKMSMMGHKVRVLPWSTFRLN
LSVTTPYNADFDGDEMNLHVPQSMETRAEILELAMVNRMIVTPQSNRPVMGIVQDTLTAV
RKMTKRDSFIEKENFMNLLMFINNWNGTMPQPAILKPKPLWTGKQLFSLIIPPGINCIRT
HSTHPDGEDSGPYKYISPGDTRVLVENGVLLSGIVCKKSLGTSSGSLCHIVALEKTPDIC
REFYINIQTAVNNWLMVEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIEVIEKAHKGDL
QPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVI
AVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGRE
GLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTVRQCNDYMIQLCYGEDGLAGEKVEFQN
LATLKPSHKTFEKKFKFDYSKERYMRRCLSEDVVRQIQTDVAIQQELETEFEQLTQDREN
IRAIIPSGDSKVVLPVNLSRLIWNAQKTFHIDLRSPSTLNPIRVIEGVRDLSKRLVIVPG
EDRLSKEAQSNATLLFNAHLRSTLCSRRVADEFRLSQEAFEWILGEVETKFQQAHAHPGE
MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPKTPSLTIYLVG
LPTRDAQRCKDVLCRLEHATLRKVTANTAIYYDPDPMNTVIAEDQEFVNVYYEMPDFDVT
RISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNR
Nucleotide sequence
Length: 3,777
>Phfumi.CG.MTP2014.S63.g00766.02.t
ATGGCTCAGCTGACAGAGTCCAACATCGACCTGCGTCAAGTTCGTCGAGTTCAGTTTGGA
ATTCTCAGCCCAGATGAAGTCAAACGCATGTCTGTTACCGAAGGGGGCGTGCAATACCCA
GAAGTTACAGAAGGGGGTAGACCAAAACTTTTGGGCCTAATGGACCCACGTCAAGGTGTG
GTTGACAGAATGTCCAGGTGTCAGACCTGTGCTGGAAATATGACCGACTGTCCTGGTCAT
TTTGGCCACATTGAACTTGCAAAGCCTGTTTTCCATGTTGGCTTTTTGACAAAATCAATA
AAACTTCTTCGTTGTGTATGCTTCTATTGTTCGAGATTGCTTGTGGAAAAGGGTAACCCT
AAAATTCGACAAGTGATGTCCAAATCCAAAGGACAGCCACGTAAACGACTTGCGCATGTC
TATGAATTGTGCAAGGGCAAAAACATTTGTGAAGGGGGAGAAGAAATGGACAACACATTT
GATGTTCAACAACGTGATGAAGATGAGCCAAGAAAAGTTGGTCATGGTGGGTGTGGTCGA
TATCAACCAAAGATTCGGAGGCAAGGAATGGAACTAATTGCAGAGTGGAAACATGTCAAT
GAAGACTCACAAGAAAAGAAAATTACTGTGTCAGCTGAAAGAGTTCATGAAATTTTTAAG
AGAATATCAGATGAAGAGTCTGAGATTCTTGGAATGGATCCCAGGTTTGCCAGGCCTGAA
TGGATGATCTGTACTGTTTTGCCTGTCCCTCCACTATGTGTTCGGCCCTCTGTTGTTATG
GGTGGTGGAAGTGCAAGAAGCCAAGATGATTTGACTCACAAACTGGCTGACATCATCAAA
GCAAACCAACAACTAAAAAGAAATGAGCAAAATGGAACTGCTGCACATATTATTATGGAA
GATGTAAAACTCTTACAGTATCATGTTGCCACCTTGACAGATAATGAAATGCCAGGGGTT
CCAAGGGCTTTGCAAAAATCAGGTCGACCACTAAAATCAATCAAACAGAGGTTGAAGGCC
AAAGAAGGACGAATTCGTGGAAATTTGATGGGAAAGCGAGTAGATTTTTCTGCCCGAACT
GTTATTACACCAGATCCAAATTTAAAAATAGATGAGGTTGGAGTCCCACGATCAATTGCT
TGCAATTTAACCTACCCTGAAATTGTGACTCCTTTTAACATTGACCGAATGCAAGAGCTT
GTCAGGAGAGGTAACAACCAATACCCAGGCGCAAAATATATTATTCGTGACAGTGGGGAC
AGAATTGACCTTCGGTATCATCCAAAACTCTCTGATCTCCATTTGCAAGTTGGATACAAG
GTCGAACGACATTTGAAAGAGGGTGATGTTATTGTTTTCAACCGGCAGCCAACTCTTCAC
AAAATGTCCATGATGGGACACAAAGTTCGTGTCCTGCCGTGGTCCACATTTAGGTTAAAC
TTGTCTGTAACAACACCATACAATGCTGATTTTGATGGTGATGAAATGAATCTCCATGTT
CCACAATCAATGGAAACTCGAGCTGAGATCCTGGAGTTAGCAATGGTCAATAGAATGATT
GTCACTCCTCAGAGCAACCGTCCTGTTATGGGTATTGTGCAAGATACTCTGACTGCTGTG
AGAAAAATGACAAAAAGAGATTCATTCATAGAAAAGGAGAACTTTATGAATTTGCTGATG
TTTATCAATAACTGGAATGGTACAATGCCCCAACCAGCCATTCTAAAACCAAAACCACTG
TGGACGGGCAAGCAGTTGTTTTCCCTTATTATACCACCAGGTATCAACTGCATCCGAACG
CACAGCACACATCCTGATGGAGAAGACTCAGGACCTTACAAGTACATTTCACCTGGTGAC
ACCCGGGTGCTTGTAGAAAACGGAGTGTTGCTGAGTGGAATTGTTTGCAAAAAATCTTTG
GGGACTTCCTCTGGGTCTCTGTGCCATATAGTCGCTCTTGAAAAAACTCCAGATATTTGT
AGGGAGTTTTACATCAACATACAGACTGCTGTGAACAACTGGCTCATGGTGGAAGGACAT
TCTATTGGTATTGGTGATACCATTGCAGATGCTCAAACCTATCAGGACATTCAAAACCAG
ATTCGCAAGGCCAAACAGGAAGTGATAGAGGTCATAGAAAAGGCCCACAAAGGAGATTTG
CAACCCACACCAGGAAATACACTTCGACAAACTTTTGAGAATCAAGTGAACAGAATTCTT
AATGATGCCCGTGACAAGACTGGTTCATCTGCGCAGAAAAGTTTGTCAGATTTCAACAAC
TTTAAGGCCATGGTGGTTGCTGGATCCAAGGGTTCAAAAATTAATATTTCCCAGGTTATT
GCTGTTGTGGGACAACAAAACGTTGAAGGAAAGCGAATTCCGTTTGGTTTCAGACACCGA
ACTCTTCCTCATTTTATCAAGGATGATTATGGTCCAGAAGCCCGAGGATTTGTGGAAAAC
TCTTATCTTGCTGGTCTCACACCAACAGAGTTCTATTTTCACGCCATGGGTGGAAGAGAG
GGTTTAATTGATACCGCTGTAAAAACTGCTGAAACTGGTTATATTCAGCGTCGTCTAGTG
AAAGCCATGGAGGCTGTAATGGTTCGATACGATGGCACAGTGCGACAGTGCAATGATTAT
ATGATTCAGTTGTGTTATGGGGAGGATGGTCTCGCTGGAGAGAAAGTCGAGTTCCAAAAT
CTGGCAACTCTTAAACCAAGTCATAAGACATTTGAAAAGAAATTCAAGTTCGACTACTCC
AAAGAGCGATACATGAGAAGGTGTCTTTCTGAGGATGTGGTGCGCCAAATTCAAACTGAT
GTTGCAATCCAACAAGAACTGGAAACTGAATTTGAACAACTAACACAAGATCGAGAAAAT
ATTCGTGCAATTATACCTTCTGGCGACAGCAAGGTCGTTCTGCCGGTTAACCTAAGCCGA
CTAATCTGGAATGCGCAAAAGACTTTTCACATCGACTTGCGCAGTCCGTCGACGCTCAAC
CCAATTCGGGTGATCGAAGGTGTTCGTGACCTCAGTAAGCGACTTGTAATCGTCCCCGGA
GAAGATAGACTTAGTAAAGAGGCACAGAGCAACGCCACACTGCTGTTTAATGCTCACTTG
AGATCTACGCTGTGTTCACGGCGAGTGGCTGACGAGTTCAGGTTGTCCCAGGAAGCATTT
GAATGGATCTTGGGTGAAGTTGAGACCAAATTCCAACAAGCACATGCACATCCGGGCGAA
ATGGTGGGAGCGCTCGCTGCCCAGTCTCTGGGAGAACCCGCCACACAGATGACGCTTAAC
ACCTTCCATTACGCTGGTGTGTCGGCCAAAAACGTCACACTCGGTGTGCCTCGACTTAAG
GAACTGATCAATGTTTCGAAAAAGCCTAAAACGCCTTCCCTCACCATTTACTTGGTTGGT
TTGCCCACGAGAGATGCACAACGCTGCAAGGATGTCTTGTGTCGTTTGGAACACGCCACT
TTGCGTAAGGTCACTGCCAACACTGCGATCTACTACGACCCCGATCCGATGAACACAGTC
ATTGCCGAGGATCAGGAATTCGTCAACGTTTACTATGAGATGCCGGATTTTGACGTCACG
CGAATATCTTCGTGGCTTTTGCGTATTGAGCTGGACCGAAAAAGAATGACTGACAAGAAA
CTGAGTATGGAACAGATTGCGGAAAAGATCAGCGCTGGTTTCGGCGACGACCTTAATTGT
ATTTTCAACGATGATAACGCCGAGAAATTGGTCCTGCGAATCAGGATCATGAACAGG
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[12-349] 2.9E-107 |
| SMART |
RNA_pol_N (IPR006592) - T[240-544] 5.2E-203 |
| Pfam |
RNA_pol_asu (IPR000722) - T[351-516] 1.7E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[520-687] 1.4E-46 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[682-827] 1.5E-54 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[713-818] 6.7E-37 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[825-1158] 1.4E-63 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[891-1074] 4.0E-69 |
| Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1159-1259] 9.5E-46 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1159-1258] 5.9E-46 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 27.859 % | 395 | 2.94E-115 |
| RPC1_HUMAN | 37.95 % | 581 | 0 |
| RPB1_HUMAN | 79.442 % | 2146 | 0 |