- EST 'BW407640' >
- Clone 'cicl045f07' >
- Transcript 'KH2012:KH.C3.100.v1....' >
- Molecular Tool 'Nodal mRNA' >
- Transcript 'Phfumi.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S646.g02474.01.t
Possible name(s)
ARNT; ARNT2; ARNTL
Gene model
Location
S646 [5,202 / 11,550]
Amino acid sequence
Length: 472
>Phfumi.CG.MTP2014.S646.g02474.01.p
KHLVLEAADGFLFVTACDSSQVVYVSDTVTAVLNQAHAEWNGHLLYDLIHPDDVGKVREQ
LCISESQNSGRVLDLKTGTVKKEGQQSSVRMCMGSRRAFICRMRCGKHQMNMARPRYMRA
QNTLGQPEDGKDAYVVMHVTGFIRAWPPAGYGSEADAMDEVSLAAGNNSGNYCLVAVARL
QITSHPGIDEISSSHEATEFVSRHGRDGAFTFVDLRVTGVLGYQPQDLLTKMPSDFYHPE
DVEHMKESFKQVLLLKGQVLTMSYRFRTQSGEYAWLRTSSFSFQNPYNNEVEYVVCTNTL
VKQPGAEQHQVEVPNTAVPAEIKSMPTYAHTASEQSPQVMQQYPMAQVAVKSPGTEMDYS
PQQQFNSPTQAGWNHGAAVPATVSPYQPQQTVSERFAPNIAAQHNAGSVPYSSGSYQASP
PVGMYPVTAAHHPIRDAYQQQEAMAAMMEPGAAAYTQADYNNLGMYTSYSES
Nucleotide sequence
Length: 1,419
>Phfumi.CG.MTP2014.S646.g02474.01.t
AAGCATCTTGTGCTTGAAGCTGCAGATGGATTTCTCTTCGTTACCGCATGCGATTCCAGC
CAAGTTGTCTATGTTTCAGACACTGTGACCGCCGTACTCAATCAGGCACATGCTGAATGG
AACGGGCACCTATTATACGACCTTATTCATCCTGATGATGTTGGAAAAGTCAGAGAACAG
TTATGCATTTCCGAATCCCAAAACTCAGGTCGAGTGTTGGACCTGAAGACGGGCACAGTG
AAAAAAGAAGGACAACAAAGCTCAGTAAGGATGTGCATGGGATCAAGGAGAGCTTTTATA
TGTAGAATGAGATGTGGCAAGCATCAGATGAACATGGCACGACCAAGATACATGAGAGCA
CAAAATACCCTTGGTCAGCCTGAAGATGGGAAGGATGCTTATGTAGTGATGCATGTAACT
GGTTTCATCCGCGCCTGGCCACCTGCAGGTTATGGGTCAGAAGCTGACGCAATGGATGAA
GTCTCACTTGCAGCTGGTAACAACTCTGGCAACTACTGTCTTGTTGCTGTGGCAAGGCTG
CAGATCACAAGCCATCCAGGCATTGATGAGATTAGTTCATCTCATGAGGCAACAGAGTTT
GTCTCCAGACATGGAAGAGATGGTGCTTTTACATTTGTAGATCTTCGGGTTACTGGAGTG
CTTGGTTATCAACCTCAGGATCTTCTGACCAAGATGCCTTCTGATTTTTACCACCCAGAG
GATGTTGAACACATGAAAGAGAGTTTTAAACAAGTATTGCTGCTGAAGGGCCAGGTGCTG
ACCATGTCCTACAGATTTCGCACCCAATCAGGCGAATATGCATGGCTGAGGACCAGCTCC
TTCTCCTTTCAGAATCCATACAACAACGAAGTGGAATACGTGGTGTGCACCAACACACTT
GTCAAACAACCTGGTGCTGAACAGCATCAAGTAGAAGTTCCTAATACTGCTGTCCCTGCT
GAGATCAAGTCCATGCCAACTTATGCCCATACAGCCAGCGAGCAATCTCCGCAGGTCATG
CAGCAATATCCTATGGCCCAAGTTGCAGTCAAAAGCCCAGGGACGGAAATGGATTATTCT
CCACAACAGCAATTTAACTCCCCCACTCAAGCTGGATGGAACCATGGAGCGGCTGTTCCA
GCTACAGTTAGCCCATATCAACCGCAGCAAACAGTGTCGGAGCGCTTTGCACCAAATATA
GCTGCTCAACATAATGCTGGATCAGTTCCATATAGCTCTGGATCATACCAAGCCTCCCCA
CCAGTGGGCATGTATCCAGTAACTGCTGCTCACCACCCTATAAGGGATGCTTACCAACAG
CAGGAAGCCATGGCAGCAATGATGGAGCCAGGAGCAGCTGCCTACACCCAAGCTGACTAC
AATAATCTGGGAATGTATACTTCCTATTCCGAATCTTGA
| ProSiteProfiles |
PAS (IPR000014) - T[1-70] 11.134 - T[207-256] 12.614 |
| SMART |
PAS (IPR000014) - T[2-66] 0.057 - T[188-254] 1.8E-5 |
| Pfam |
PAS_fold (IPR013767) - T[4-105] 3.6E-8 |
| CDD |
PAS (IPR000014) - T[8-97] 3.33959E-7 - T[197-295] 1.58838E-14 |
| SUPERFAMILY |
PAS-like_dom_sf (IPR035965) - T[9-138] 8.8E-11 - T[199-300] 6.28E-26 |
| PRINTS |
Nuc_translocat (IPR001067) - T[15-34] 8.5E-39 - T[47-65] 8.5E-39 - T[93-106] 8.5E-39 - T[134-153] 8.5E-39 - T[199-216] 8.5E-39 |
| TIGRFAM |
PAS (IPR000014) - T[205-295] 9.3E-8 |
| SMART |
PAC (IPR001610) - T[261-304] 1.6E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARNT_HUMAN | 55.128 % | 368 | 9.61E-120 |
| ARNT2_HUMAN | 56.289 % | 367 | 3.59E-120 |
| BMAL1_HUMAN | 36.474 % | 231 | 4.0E-69 |