Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S750.g02673.01.t

Possible name(s)

VTI1A; VTI1B

Gene model

Phfumi.CG.MTP2014.S750.g02673

Location

S750 [3,398 / 5,148]

Sequences

Amino acid sequence

Length: 168

>Phfumi.CG.MTP2014.S750.g02673.01.p
MASLVNSYEQQFSSLTAEITQRIGTISLYHGADKKSLISTIERQLDEAQELLEQMDLEVR
ELSSAERGKLMGRLKSYQHEFNNLESQIKKAKTSSINKANQMREELLGMDEYGNDDQKTR
LLDNTERLENSSRRLEIGYRVATETEKIGQDILDNLHRDRETINRSRQ

Nucleotide sequence

Length: 504

>Phfumi.CG.MTP2014.S750.g02673.01.t
ATGGCGTCTTTGGTGAATTCTTATGAACAACAGTTCTCGAGTCTAACCGCTGAAATTACC
CAGAGAATTGGAACCATTTCGCTTTACCATGGAGCTGACAAGAAATCTTTAATCAGCACT
ATTGAAAGACAATTGGATGAAGCACAAGAACTTCTTGAACAAATGGATCTTGAAGTTCGT
GAACTGTCAAGTGCTGAAAGAGGAAAGCTAATGGGAAGATTAAAAAGCTATCAGCATGAA
TTTAACAACCTAGAATCTCAAATTAAAAAGGCGAAAACTTCATCGATAAATAAAGCTAAC
CAAATGAGGGAAGAGTTGCTTGGTATGGATGAATACGGAAATGATGATCAGAAAACAAGA
CTTCTGGATAACACAGAGAGATTGGAAAATTCTTCACGGCGATTGGAAATTGGATACAGG
GTTGCGACTGAGACTGAAAAAATTGGCCAGGATATTTTGGATAACCTGCATAGAGACAGA
GAAACTATAAACCGAAGCAGACAA

InterProScan

Gene3D	v-SNARE_N_sf (IPR038407) - T[1-100] 9.2E-32
SUPERFAMILY	SNARE (IPR010989) - T[7-91] 1.26E-23
Pfam	Vesicle_trsprt_v-SNARE_N (IPR007705) - T[12-90] 3.5E-23

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
VTI1A_HUMAN	48.81 %	159	1.2E-49