Aniseed - Transcript Card

Transcript 'Phfumi.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S7613.g07812.02.t

Possible name(s)

FMR1; FXR1; FXR2

Gene model

Phfumi.CG.MTP2014.S7613.g07812

Location

S7613 [764 / 8,574]

Sequences

Amino acid sequence

Length: 426

>Phfumi.CG.MTP2014.S7613.g07812.02.p
IQVSQQKATSCTEHFHVADDLIGLAIGTNGTNIIAARNVPGVIDIILDEETHNFTVYGET
KEAVSKAREILEFMETEVLVPRPFVGKVIGKKGVTIQEMIDKSGVLRVRVIGDDENEPGN
RTDGLVPFRFVGTRENIHNAQALLNYHVAYLKDLDHIRLEQINLNQKIKQLGSGGHGPGS
GLPPRGDDGEPRRYPRPNRRYNEERRNRSDREGGTASELSNVSDTGSETGDSMAEGKPLT
RREYGPGADPRYNRGRGGYRGRGNYRGGGRGNSQMSHQERQHPSMKNTILSDPNRNPYDL
LSNDDEGGPREDSPQGAPNGRFEKGDRPHGGDGSFRGGRGRRGRGRNDGGGRGGGYHNNH
NQHNPNGGDMPNKGPIKQGKKSPDNDHKQNGDKKQPHDDAKEQRPPRKSGPISNTKKPAA
EVNGVA

Nucleotide sequence

Length: 1,281

>Phfumi.CG.MTP2014.S7613.g07812.02.t
ATTCAGGTTAGCCAGCAAAAGGCCACATCATGCACTGAGCACTTTCATGTTGCTGACGAC
TTGATCGGCCTTGCGATTGGGACAAACGGAACAAATATTATAGCAGCACGCAATGTTCCT
GGTGTCATTGACATTATACTGGATGAAGAAACCCACAATTTCACTGTCTATGGTGAAACT
AAAGAGGCAGTATCGAAAGCTCGAGAAATCTTGGAATTTATGGAAACTGAAGTTCTTGTG
CCCAGGCCATTTGTTGGCAAGGTGATTGGGAAAAAAGGAGTCACAATTCAAGAAATGATT
GATAAATCTGGTGTGCTTCGAGTTCGAGTGATCGGCGATGATGAGAATGAACCTGGAAAT
CGAACTGACGGACTTGTGCCATTTCGCTTTGTTGGGACCAGAGAAAACATCCACAATGCA
CAGGCGCTGCTTAACTATCATGTAGCATACCTCAAGGATCTGGACCACATCAGATTGGAA
CAAATAAACCTGAACCAGAAAATTAAGCAACTTGGCTCAGGCGGTCATGGACCTGGCTCT
GGACTGCCCCCTCGTGGAGATGATGGAGAGCCTCGCAGATACCCACGCCCTAATCGCAGA
TATAATGAGGAAAGGAGGAACCGGTCAGATCGTGAAGGCGGCACCGCGTCCGAATTGTCA
AACGTTTCCGACACTGGATCCGAGACTGGAGACTCCATGGCTGAGGGAAAGCCCCTGACG
CGAAGAGAATATGGACCCGGGGCCGACCCCAGATACAATCGGGGGCGTGGCGGTTACCGG
GGTCGGGGCAATTACCGTGGGGGCGGCCGGGGAAATTCCCAGATGAGCCACCAGGAGAGG
CAACACCCTAGTATGAAAAATACCATTTTGTCCGACCCAAACAGGAACCCATACGACCTT
CTTTCCAACGACGACGAGGGCGGGCCACGCGAAGACTCGCCACAGGGCGCCCCTAATGGC
CGCTTTGAGAAAGGTGATCGCCCGCATGGTGGCGACGGTAGTTTTCGTGGCGGCCGGGGT
CGCAGAGGCAGAGGACGAAACGACGGAGGGGGCAGAGGTGGCGGGTATCACAACAACCAC
AATCAACACAACCCTAACGGCGGCGACATGCCCAATAAAGGTCCAATAAAACAAGGCAAA
AAGTCTCCTGACAACGATCATAAACAGAACGGCGACAAAAAGCAACCGCACGATGACGCT
AAAGAGCAGCGTCCACCGCGCAAATCCGGTCCCATCTCCAACACAAAGAAGCCAGCAGCT
GAAGTGAACGGCGTAGCGTAA

InterProScan

Gene3D	KH_dom_type_1_sf (IPR036612) - T[8-71] 9.0E-25 - T[72-152] 1.8E-22
SUPERFAMILY	KH_dom_type_1_sf (IPR036612) - T[9-77] 4.34E-10 - T[74-154] 1.0E-10
SMART	KH_dom (IPR004087) - T[9-75] 0.21 - T[76-149] 0.0034
Pfam	KH_dom_type_1 (IPR004088) - T[76-145] 6.7E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
FXR1_HUMAN	42.244 %	197	4.27E-57
FXR2_HUMAN	56 %	194	2.35E-55
FMR1_HUMAN	55.652 %	125	4.8E-31