Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S7613.g07812.05.t

Possible name(s)

FMR1; FXR1; FXR2

Gene model

Phfumi.CG.MTP2014.S7613.g07812

Location

S7613 [764 / 8,574]

Sequences

Amino acid sequence

Length: 449

>Phfumi.CG.MTP2014.S7613.g07812.05.p
IQVSQQKATSCTEHFHVADDLIGLAIGTNGTNIIAARNVPGVIDIILDEETHNFTVYGET
KEAVSKAREILEFMETEVLVPRPFVGKVIGKKGVTIQEMIDKSGVLRVRVIGDDENEPGN
RTDGLVPFRFVGTRENIHNAQALLNYHVAYLKDLDHIRLEQINLNQKIKQLGSGGHGPGS
GLPPRGDDGEPRRYPRPNRRYNEERRNRSDREGGTASELSNVSDTGSETGDSMAEGKPLT
RREYGPGADPRYNRGRGGYRGRGNYRGGGRGNSQMSHQERQHPSMKNTILSDPNRNPYDL
LSNDDEGGPREDSPQGAPNGRFEKGDRPHGGDGSFRGGRGRRGRGRNDGGGRGGGYHNNH
NQHNPNGGDMPNLDSDFPPLIDWADCVESANDFIDKGPIKQGKKSPDNDHKQNGDKKQPH
DDAKEQRPPRKSGPISNTKKPAAEVNGVA

Nucleotide sequence

Length: 1,350

>Phfumi.CG.MTP2014.S7613.g07812.05.t
ATTCAGGTTAGCCAGCAAAAGGCCACATCATGCACTGAGCACTTTCATGTTGCTGACGAC
TTGATCGGCCTTGCGATTGGGACAAACGGAACAAATATTATAGCAGCACGCAATGTTCCT
GGTGTCATTGACATTATACTGGATGAAGAAACCCACAATTTCACTGTCTATGGTGAAACT
AAAGAGGCAGTATCGAAAGCTCGAGAAATCTTGGAATTTATGGAAACTGAAGTTCTTGTG
CCCAGGCCATTTGTTGGCAAGGTGATTGGGAAAAAAGGAGTCACAATTCAAGAAATGATT
GATAAATCTGGTGTGCTTCGAGTTCGAGTGATCGGCGATGATGAGAATGAACCTGGAAAT
CGAACTGACGGACTTGTGCCATTTCGCTTTGTTGGGACCAGAGAAAACATCCACAATGCA
CAGGCGCTGCTTAACTATCATGTAGCATACCTCAAGGATCTGGACCACATCAGATTGGAA
CAAATAAACCTGAACCAGAAAATTAAGCAACTTGGCTCAGGCGGTCATGGACCTGGCTCT
GGACTGCCCCCTCGTGGAGATGATGGAGAGCCTCGCAGATACCCACGCCCTAATCGCAGA
TATAATGAGGAAAGGAGGAACCGGTCAGATCGTGAAGGCGGCACCGCGTCCGAATTGTCA
AACGTTTCCGACACTGGATCCGAGACTGGAGACTCCATGGCTGAGGGAAAGCCCCTGACG
CGAAGAGAATATGGACCCGGGGCCGACCCCAGATACAATCGGGGGCGTGGCGGTTACCGG
GGTCGGGGCAATTACCGTGGGGGCGGCCGGGGAAATTCCCAGATGAGCCACCAGGAGAGG
CAACACCCTAGTATGAAAAATACCATTTTGTCCGACCCAAACAGGAACCCATACGACCTT
CTTTCCAACGACGACGAGGGCGGGCCACGCGAAGACTCGCCACAGGGCGCCCCTAATGGC
CGCTTTGAGAAAGGTGATCGCCCGCATGGTGGCGACGGTAGTTTTCGTGGCGGCCGGGGT
CGCAGAGGCAGAGGACGAAACGACGGAGGGGGCAGAGGTGGCGGGTATCACAACAACCAC
AATCAACACAACCCTAACGGCGGCGACATGCCCAATCTTGATTCGGACTTTCCTCCGCTT
ATTGACTGGGCAGATTGTGTCGAGTCAGCAAATGACTTTATCGATAAAGGTCCAATAAAA
CAAGGCAAAAAGTCTCCTGACAACGATCATAAACAGAACGGCGACAAAAAGCAACCGCAC
GATGACGCTAAAGAGCAGCGTCCACCGCGCAAATCCGGTCCCATCTCCAACACAAAGAAG
CCAGCAGCTGAAGTGAACGGCGTAGCGTAA

InterProScan

Gene3D	KH_dom_type_1_sf (IPR036612) - T[8-71] 9.7E-25 - T[72-152] 1.9E-22
SUPERFAMILY	KH_dom_type_1_sf (IPR036612) - T[9-77] 4.56E-10 - T[74-150] 1.11E-10
SMART	KH_dom (IPR004087) - T[9-75] 0.21 - T[76-149] 0.0034
Pfam	KH_dom_type_1 (IPR004088) - T[76-145] 7.2E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
FXR1_HUMAN	41.967 %	197	8.82E-57
FXR2_HUMAN	56 %	194	3.84E-55
FMR1_HUMAN	55.652 %	125	8.13E-31