- Transcript 'Phfumi.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S7.g00147.02.t
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
S7 [42,657 / 43,950]
Amino acid sequence
Length: 357
>Phfumi.CG.MTP2014.S7.g00147.02.p
MHSTILADRPYAAYDPRASLTPHGGYLGHQGTIDSQHFAFAPPPTASYYSGYGVFPHLQH
QLQAQMQHPVYNREPQQPVNCLQEPVVCKWKTPNHDGGHVCGVIFHDLNDLVNHVTRDHV
GGIEQTDHTCYWGGCSRTGKAFKAKYKLVNHLRVHTGEKPFVCNFPGCGKMFGRSENLKI
HLRVHTGEKPFPCKFPGCDRRFANSSDRKKHSYMHNTEKLYACKYEDCDRSYTHPSSLRK
HIKMHEANGDVMIASPSSSSSAASIEALSPIPSPQVGNEAVTSTPSPNHDLKTHHNDAVI
PFSTSSPLKTVDHWSAPVNHHNDMYMPVHQQQYAQPTATFQPNFTQFSAESLVTPSF
Nucleotide sequence
Length: 1,071
>Phfumi.CG.MTP2014.S7.g00147.02.t
ATGCATTCGACTATCTTAGCCGATCGTCCTTACGCAGCTTACGACCCACGGGCCAGTTTA
ACCCCACATGGTGGGTATTTGGGCCACCAAGGGACCATTGACAGCCAGCACTTCGCCTTT
GCACCGCCGCCAACTGCTTCTTATTATTCTGGCTACGGGGTGTTTCCCCACTTGCAGCAC
CAGCTTCAAGCTCAGATGCAACACCCAGTTTACAACAGAGAGCCGCAGCAACCAGTCAAC
TGCCTTCAAGAACCCGTGGTCTGCAAATGGAAAACACCAAACCATGACGGCGGTCACGTG
TGCGGGGTAATCTTCCACGACCTTAATGACCTTGTTAACCACGTGACAAGAGATCACGTG
GGCGGCATCGAGCAAACCGACCACACCTGCTACTGGGGTGGTTGTTCGCGCACTGGCAAG
GCTTTCAAGGCCAAGTACAAGTTGGTGAATCACCTGCGCGTTCACACAGGGGAGAAACCG
TTCGTTTGCAACTTCCCTGGATGCGGAAAAATGTTTGGAAGAAGCGAGAACTTAAAGATC
CACCTTCGTGTTCATACAGGTGAAAAACCGTTTCCTTGCAAATTTCCCGGATGTGATAGA
CGATTCGCAAACAGCTCAGACCGCAAGAAGCACAGCTACATGCACAACACTGAGAAACTT
TACGCCTGCAAGTACGAAGACTGTGACCGCAGCTACACTCACCCAAGCTCCCTTCGCAAA
CACATCAAGATGCACGAAGCAAACGGTGACGTCATGATTGCGTCACCATCATCGTCATCA
TCGGCAGCGTCCATTGAGGCCCTTTCCCCGATTCCCAGCCCACAGGTCGGCAACGAAGCG
GTGACGTCGACACCAAGTCCGAATCACGACCTCAAGACCCATCACAACGACGCTGTTATT
CCATTTTCGACGTCATCGCCACTAAAAACCGTCGACCACTGGAGTGCGCCAGTGAACCAC
CACAACGACATGTACATGCCCGTTCACCAGCAGCAGTACGCGCAGCCCACTGCCACTTTC
CAACCCAACTTTACCCAGTTTTCGGCTGAAAGTTTGGTAACTCCCAGTTTC
| SMART |
Znf_C2H2_type (IPR013087) - T[99-119] 140.0 - T[128-155] 1.7 - T[161-185] 2.7E-4 - T[191-215] 0.019 - T[221-245] 4.6E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[133-160] 12.653 - T[161-190] 16.311 - T[191-220] 10.533 - T[221-250] 11.24 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[141-197] 5.76E-20 - T[185-241] 8.38E-10 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[161-185] 4.0E-5 - T[221-245] 2.6E-5 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[163-185] . - T[193-215] . - T[223-245] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 53.425 % | 228 | 2.47E-72 |
| ZIC2_HUMAN | 57 % | 235 | 7.27E-73 |
| ZIC3_HUMAN | 52.361 % | 233 | 7.02E-73 |